Found 66 Documents (Results 1–66)
The distribution of waiting distances in ancestral recombination graphs. (English) Zbl 1478.92132
MSC:
92D15
Solving the selection-recombination equation: ancestral lines and dual processes. (English) Zbl 1478.92126
Solving the migration-recombination equation from a genealogical point of view. (English) Zbl 1465.92072
NCHB: a method for constructing rooted phylogenetic networks from rooted triplets based on height function and binarization. (English) Zbl 1430.92057
Robust model selection between population growth and multiple merger coalescents. (English) Zbl 1425.92141
Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes. (English) Zbl 1410.92066
Multi-locus data distinguishes between population growth and multiple merger coalescents. (English) Zbl 1398.92207
Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population. (English) Zbl 1393.92035
A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning. (English) Zbl 1367.92071
Theor. Popul. Biol. 112, 126-138 (2016); corrigendum ibid. 130, 203 (2019).
Spread of pedigree versus genetic ancestry in spatially distributed populations. (English) Zbl 1343.92353
Partitioning, duality, and linkage disequilibria in the Moran model with recombination. (English) Zbl 1359.92080
Reviewer: Carlos A. dos Santos Braumann (Évora)
Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action. (English) Zbl 1343.92314
Coalescent simulation in continuous space: algorithms for large neighbourhood size. (English) Zbl 1296.92209
MSC:
92D25
Probability that a sequence is lost without trace under the neutral Wright-Fisher model with recombination. (English) Zbl 1334.60139
Bayesian hierarchical modeling of the HIV evolutionary response to therapy. (English) Zbl 1288.62160
Effect of epistasis and linkage on fixation probability in three-locus models: an ancestral recombination-selection graph approach. (English) Zbl 1322.92034
The joint allele frequency spectrum of multiple populations: a coalescent theory approach. (English) Zbl 1322.92044
The mapping of epistatic effects onto a genealogical tree in haploid populations. (English) Zbl 1322.92033
Sufficiency of the number of segregating sites in the limit under finite-sites mutation. (English) Zbl 1403.92152
MSC:
92D10
Sufficiency of the number of segregating sites in the limit under finite-sites mutation. (English) Zbl 1338.92082
Evolution of the ancestral recombination graph along the genome in case of selective sweep. (English) Zbl 1205.92053
Asymptotic behavior of a Moran model with mutations, drift and recombination among multiple loci. (English) Zbl 1205.92051
Stepbrothers: inferring partially shared ancestries among recombinant viral sequences. (English) Zbl 1437.62398
MSC:
62P10
Sequential Markov coalescent algorithms for population models with demographic structure. (English) Zbl 1213.92037
The structure of level-\(k\) phylogenetic networks. (English) Zbl 1247.92018
Kucherov, Gregory (ed.) et al., Combinatorial pattern matching. 20th annual symposium, CPM 2009, Lille, France, June 22–24, 2009. Proceedings. Berlin: Springer (ISBN 978-3-642-02440-5/pbk). Lecture Notes in Computer Science 5577, 289-300 (2009).
Approximating genealogies for partially linked neutral loci under a selective sweep. (English) Zbl 1125.92042
How to compute the effective size of spatiotemporally structured populations using separation of time scales. (English) Zbl 1118.92037
Consistency of estimators of population scaled parameters using composite likelihood. (English) Zbl 1116.62130
Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium. (English) Zbl 1105.92018
Maximum likelihood estimation of a migration matrix and effective population sizes in \(n\) subpopulations by using a coalescent approach. (English) Zbl 0993.62096
Segregating sites in Wright’s island model. (English) Zbl 0907.92019
MSC:
92D15
A Markov chain model of coalescence with recombination. (English) Zbl 0908.92024
Reviewer: F.T.Adylova (Tashkent)
Which locus has the oldest allele? (English) Zbl 0732.92013
MSC:
92D10
A multi-dimensional coalescent process applied to multi-allelic selection models and migration models. (English) Zbl 0714.92009
MSC:
92D10
Reconstructing evolution of sequences subject to recombination using parsimony. (English) Zbl 0692.92014
On the divergence of genes in multigene families. (English) Zbl 0607.92013
Reviewer: C.W.Lamb
MSC:
92D10
Filter Results by …
Document Type
- Journal Articles (65)
- Collection Articles (1)
all
top 5
Author
- Wakeley, John (6)
- Baake, Ellen (4)
- Griffiths, Robert C. (4)
- Alberti, Frederic (3)
- Griswold, Cortland K. (3)
- Lessard, Sabin (3)
- Pfaffelhuber, Peter (3)
- Barton, Nick H. (2)
- Etheridge, Alison Mary (2)
- Fearnhead, Paul (2)
- Hein, Jotun J. (2)
- Hudson, Richard R. (2)
- Kaplan, Norman L. (2)
- Kelleher, Jerome (2)
- Koskela, Jere (2)
- Nielsen, Rasmus Refslund (2)
- Pina, Verónica Miró (2)
- Schertzer, Emmanuel (2)
- Véber, Amandine (2)
- Arjas, Elja (1)
- Beerli, Peter (1)
- Berry, Vincent (1)
- Bloomquist, Erik W. (1)
- Bobrowski, Adam (1)
- Boitard, Simon (1)
- Braunstein, Alexander F. (1)
- Carmi, Shai (1)
- Chen, Hua (1)
- Chen, Xian (1)
- Chikhi, Lounès (1)
- Churchill, Gary A. (1)
- Crane, Harry (1)
- Deng, Yun (1)
- Dorman, Karin S. (1)
- Durand, Guillermo A. (1)
- Eisner, Danielle J. (1)
- Eldon, Bjarki (1)
- Esser, Mareike (1)
- Felsenstein, Joseph (1)
- Ferretti, Luca (1)
- Freund, Fabian (1)
- Gambette, Philippe (1)
- Gasbarra, Dario (1)
- Ghaneai, Hossein (1)
- Grusea, Simona (1)
- Gusfield, Dan (1)
- Herrmann, Carolin (1)
- Hey, Jody (1)
- Huss, Elisabeth (1)
- Innan, Hideki (1)
- Jenkins, Paul A. (1)
- Jensen, Shane T. (1)
- Kececioglu, John D. (1)
- Kermany, Amir R. R. (1)
- Kimmel, Marek (1)
- Klassmann, Alexander (1)
- Kobayashi, Yutaka (1)
- Lambert, Amaury (1)
- Laurie, Cecelia (1)
- Leocard, Stephanie (1)
- Letter, Ian (1)
- Li, Zilong (1)
- Ma, Zhi-Ming (1)
- Mahjani, Behrang (1)
- Martinez Aguilera, Servet (1)
- Mazet, Olivier (1)
- Mcauliffe, Jon D. (1)
- Mehlig, Bernhard (1)
- Notohara, Morihiro (1)
- Ohtsuki, Hisashi (1)
- Padhukasahasram, Badri K. (1)
- Pardoux, Etienne (1)
- Park, Jared (1)
- Paul, Christophe (1)
- Pe’er, Itsik (1)
- Pinchon, Didier (1)
- Pokalyuk, Cornelia (1)
- Poormohammadi, Hadi (1)
- Probst, Sebastian (1)
- Rodríguez, Willy (1)
- Sainudiin, Raazesh (1)
- Shchur, Vladimir L. (1)
- Signorovitch, James (1)
- Sillanpää, Mikko J. (1)
- Simonsen, Katy L. (1)
- Studeny, A. (1)
- Suchard, Marc A. (1)
- Tavaré, Simon (1)
- Thatte, Bhalchandra D. (1)
- Umeda, Takayoshi (1)
- van Waaij, Jan (1)
- Wang, Ying (1)
- Weir, Bruce S. (1)
- Wilke-Berenguer, Maite (1)
- Wilton, Peter R. (1)
- Wiuf, Carsten (1)
- Wojdyła, Tomasz (1)
- Yamamura, Norio (1)
- Zarchi, Mohsen Sardari (1)
all
top 5
Serial
- Theor. Popul. Biol. (35)
- J. Math. Biol. (9)
- J. Theor. Biol. (3)
- Math. Biosci. (2)
- Ann. Appl. Probab. (2)
- Stat. Appl. Genet. Mol. Biol. (2)
- Adv. Appl. Probab. (1)
- Discrete Appl. Math. (1)
- J. Stat. Phys. (1)
- Ann. Stat. (1)
- J. Am. Stat. Assoc. (1)
- Proc. Natl. Acad. Sci. USA (1)
- Stochastic Processes Appl. (1)
- Doc. Math. (1)
- Methodol. Comput. Appl. Probab. (1)
- Lobachevskii J. Math. (1)
- Biostatistics (1)
- Stoch. Dyn. (1)
all
top 3
Software
- Mathematica (3)
- OEIS (2)
- Recodon (2)
- pyuvdata (2)
- simuPOP (2)
- BEAST (1)
- BEAUti (1)
- FiPy (1)
- Genetree (1)
- Genomepop (1)
- Hybrid-Lambda (1)
- LAMARC (1)
- MSMS (1)
- Maple (1)
- PLINK (1)
- QNet (1)
- SageMath (1)
- StepBrothers (1)
- TriLoNet (1)
- abc (1)
- admixturegraph (1)
- discoal (1)
- fastsimcoal (1)