Phylogenetic diversity indices from an affine and projective viewpoint. (English) Zbl 07924654
MSC:
92-XX
Found 436 Documents (Results 1–100)
Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model. (English) Zbl 07909983
Products of boundary classes on \(\overline{M}_{0, n}\) via balanced weights. (English) Zbl 07904352
Agreement forests of caterpillar trees: complexity, kernelization and branching. (English) Zbl 1539.92077
Vietoris-Rips persistent homology, injective metric spaces, and the filling radius. (English) Zbl 07846440
Reviewer: Ioan Pop (Iaşi)
Deep kernelization for the tree bisection and reconnection (TBR) distance in phylogenetics. (English) Zbl 07815425
MSC:
68-XX
Phylogenomic models from tree symmetries. (English) Zbl 1532.92065
MSC:
92D15
Invariants for level-1 phylogenetic networks under the Cavendar-Farris-Neyman model. (English) Zbl 1531.92064
MSC:
92D15
On the enumeration of leaf-labeled increasing trees with arbitrary node-degree. (English) Zbl 1538.05011
Hypercubes and Hamilton cycles of display sets of rooted phylogenetic networks. (English) Zbl 1526.92038
Pseudo-rate matrices, beyond Dayhoff’s model. (English) Zbl 07914266
Flandrin, Patrick (ed.) et al., Theoretical physics, wavelets, analysis, genomics. An indisciplinary tribute to Alex Grossmann. Cham: Springer. Appl. Numer. Harmon. Anal., 617-644 (2023).
Four billion years: the story of an ancient protein family. (English) Zbl 07914265
Flandrin, Patrick (ed.) et al., Theoretical physics, wavelets, analysis, genomics. An indisciplinary tribute to Alex Grossmann. Cham: Springer. Appl. Numer. Harmon. Anal., 595-616 (2023).
MSC:
92D20
Iterative methods for common fixed points of a finite family of non-self mappings. (English) Zbl 07829207
Combinatorial statistics and the sciences. (English) Zbl 1533.60013
Beliaev, Dmitry (ed.) et al., International congress of mathematicians 2022, ICM 2022, Helsinki, Finland, virtual, July 6–14, 2022. Volume 6. Sections 12–14. Berlin: European Mathematical Society (EMS). 4170-4188 (2023).
Expanding the class of global objective functions for dissimilarity-based hierarchical clustering. (English) Zbl 07798011
A new iterative method for approximating common fixed points of two non-self mappings in a CAT(0) space. (English) Zbl 07783234
Representing and extending ensembles of parsimonious evolutionary histories with a directed acyclic graph. (English) Zbl 1530.92149
Orientation of Fitch graphs and reconciliation-free inference of horizontal gene transfer in gene trees. (English) Zbl 07749754
Computing consensus networks for collections of 1-nested phylogenetic networks. (English) Zbl 1522.92038
Visualizing multispecies coalescent trees: drawing gene trees inside species trees. (English) Zbl 1528.92024
Gąsieniec, Leszek (ed.), SOFSEM 2023: theory and practice of computer science. 48th international conference on current trends in theory and practice of computer science, SOFSEM 2023, Nový Smokovec, Slovakia, January 15–18, 2023. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13878, 96-110 (2023).
A note on generalized four-point inequality. (English) Zbl 1527.54009
J. Math. Sci., New York 273, No. 3, 414-426 (2023); and Ukr. Mat. Visn. 20, No. 1, 107-123 (2023).
Reviewer: Yoshito Ishiki (Saitama)
MSC:
54E35
Distances and isomorphism between networks: stability and convergence of network invariants. (English) Zbl 1524.68332
Injective split systems. (English) Zbl 1518.05184
Autopolyploidy, allopolyploidy, and phylogenetic networks with horizontal arcs. (English) Zbl 1514.92072
MSC:
92D15
Expected number of induced subtrees shared by two independent copies of a random tree. (English) Zbl 1510.05119
Quasi-best match graphs. (English) Zbl 1510.05048
Identifiability of local and global features of phylogenetic networks from average distances. (English) Zbl 1505.92143
The tree of blobs of a species network: identifiability under the coalescent. (English) Zbl 1505.92135
On the quartet distance given partial information. (English) Zbl 1522.92003
Reviewer: Kevin Burrage (Brisbane)
Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods. (English) Zbl 1505.92139
EmbAssi: embedding assignment costs for similarity search in large graph databases. (English) Zbl 1509.68058
Forest-based networks. (English) Zbl 1498.92134
On the effect of intralocus recombination on triplet-based species tree estimation. (English) Zbl 1496.92059
Pe’er, Itsik (ed.), Research in computational molecular biology. 26th annual international conference, RECOMB 2022, San Diego, CA, USA, May 22–25, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13278, 143-158 (2022).
MSC:
92D15
Order distances and split systems. (English) Zbl 07566359
MSC:
06-XX
Minimum spanning paths and Hausdorff distance in finite ultrametric spaces. (English) Zbl 1503.54017
Reviewer: Shou Lin (Ningde)
Bijections for ranked tree-child networks. (English) Zbl 1491.92086
MSC:
92D15
Common \(\alpha\)-fuzzy fixed point results for Kannan type contractions with application. (English) Zbl 1502.54019
J. Funct. Spaces 2022, Article ID 5632119, 9 p. (2022); retraction notice ibid. 2023, Article ID 9821539, 1 p. (2023).
Classes of explicit phylogenetic networks and their biological and mathematical significance. (English) Zbl 1491.92088
A stochastic Farris transform for genetic data under the multispecies coalescent with applications to data requirements. (English) Zbl 1498.92130
Identifiability of species network topologies from genomic sequences using the logDet distance. (English) Zbl 1486.92128
The edge-product space of phylogenetic trees is not shellable. (English) Zbl 1483.05024
Adv. Appl. Math. 135, Article ID 102311, 17 p. (2022); corrigendum ibid. 138, Article ID 102354, 2 p. (2022).
Overlaid species forests. (English) Zbl 1480.92146
Approximating common fixed points of a family of non-self mappings in CAT(0) spaces. (English) Zbl 07447190
Data analysis on nonstandard spaces. (English) Zbl 07910743
MSC:
62-08
A new efficient algorithm for finding common fixed points of multivalued demicontractive mappings and solutions of split generalized equilibrium problems in Hilbert spaces. (English) Zbl 07479099
Counting phylogenetic networks with few reticulation vertices: exact enumeration and corrections. (English) Zbl 1483.92104
MSC:
92D15
Measuring tree balance using symmetry nodes – a new balance index and its extremal properties. (English) Zbl 1480.92148
MSC:
92D15
On quasisymmetric mappings between ultrametric spaces. (English) Zbl 1485.54032
Reviewer: Thomas Zürcher (Katowice)
Best match graphs with binary trees. (English) Zbl 1480.92153
Martín-Vide, Carlos (ed.) et al., Algorithms for computational biology. 8th international conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12715, 82-93 (2021).
On fuzzy fixed-point results in complex valued extended \(b\)-metric spaces with application. (English) Zbl 1477.54147
Discrete coalescent trees. (English) Zbl 1475.92116
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes. (English) Zbl 1471.92236
Some convergence results of the \(K^*\) iteration process in CAT(0) spaces. (English) Zbl 07390080
Cho, Yeol Je (ed.) et al., Advances in metric fixed point theory and applications. Singapore: Springer. 23-40 (2021).
On the approximability of the fixed-tree balanced minimum evolution problem. (English) Zbl 1475.90081
Quasisymmetric mappings in b-metric spaces. (English. Ukrainian original) Zbl 1471.54018
J. Math. Sci., New York 256, No. 6, 770-778 (2021); translation from Ukr. Mat. Visn. 18, No. 1, 60-70 (2021).
Reviewer: Zoran Kadelburg (Beograd)
On the comparison of incompatibility of split systems across different numbers of taxa. (English) Zbl 1467.92138
Heading in the right direction? Using head moves to traverse phylogenetic network space. (English) Zbl 1464.92192
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