×

A generalization of Birch’s theorem and vertex-balanced steady states for generalized mass-action systems. (English) Zbl 1478.92073

Chemical reaction networks describing mass-action kinetics, with graph vertexes for the complexes and graph edges for the reactions, have been further developed to generalized reaction networks describing more general kinetics (such as power-law kinetics), so-called generalized mass-action systems, that mirror the stoichiometry by stoichiometric complexes and the kinetics by kinetic-order complexes, resp. The focus of study is on vertex-balanced steady states, i.e., steady states with net flux zero across every vertex, in particular on existence and uniqueness of these in every (invariant) stoichiometric subspace, for all rate constants. In the context of Birch’s theorem from statistics, if stoichiometric subspace and kinetic-order subspace have the same dimension, a condition (involving sign vectors) is found that guarantees existence and uniqueness of a vertex-balanced steady state in every stoichiometric subspace for any rate constants, provided that such a steady state exists for some rate constant. Then, moreover, the deficiency with respect to the kinetic-order complexes vanishes if and only if such a steady state exists for all rate constants. Finally, if the deficiency with respect to the stoichiometric complexes is zero, there is exactly one positive steady state, which is vertex-balanced.

MSC:

92C45 Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.)
92C40 Biochemistry, molecular biology
92C42 Systems biology, networks
92E20 Classical flows, reactions, etc. in chemistry
57N75 General position and transversality
57R99 Differential topology
62P10 Applications of statistics to biology and medical sciences; meta analysis

References:

[1] M. Feinberg, Complex balancing in general kinetic systems, Arch. Ration. Mech. Anal., 49 (1972), 187-194.
[2] F. Horn and R. Jackson, General mass action kinetics, Arch. Ration. Mech. Anal., 47 (1972), 81-116.
[3] F. Horn, Necessary and Sufficient Conditions for Complex Balancing in Chemical-Kinetics, Arch. Ration. Mech. Anal., 49 (1972), 172-186.
[4] M. A. Savageau, Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions, J. Theor. Biol., 25 (1969), 365-369.
[5] E. O. Voit, Biochemical systems
[6] S. Müller and G. Regensburger, Generalized mass-action systems and positive solutions of polynomial equations with real and symbolic exponents, (2014), Lecture notes in computer science, 8660 LNCS, Springer, 302-323. · Zbl 1421.92043
[7] S. Müller and G. Regensburger, Generalized mass action
[8] M. D. Johnston, Translated Chemical Reaction Networks, Bull. Math. Biol., 76 (2014), 1081-1116. · Zbl 1297.92096
[9] L. Brenig, Complete factorization and analytic solutions of generalized Lotka-Volterra equations, Physics Letters, 133 (1989), 378-382.
[10] L. Brenig and A. Goriely, Universal canonical forms for time-continuous dynamical systems, Phys. Rev. A, 40 (1989), 4119-4122.
[11] M. Feinberg, Lectures on chemical reaction networks, 1979. Available
[12] J. Gunawardena, Chemical reaction network theory for in-silico biologists, 2003. Available
[13] G. Craciun, A. Dickenstein, A. Shiu, et al., Toric dynamical systems, J. Symbolic Comput., 44 (2009), 1551-1565. · Zbl 1188.37082
[14] B. Boros, S. Müller and G. Regensburger, Complex-balanced equilibria of generalized mass-action
[15] L. Pachter and B. Sturmfels, Algebraic Statistics for Computational Biology, Cambridge University Press, 8 (2005). · Zbl 1108.62118
[16] G. Craciun, L. D. Gracía-Puente and F. Sottile, Some geometrical aspects of control points for toric patches, Mathematical methods for curves and surfaces, Springer, 111-135. · Zbl 1274.65033
[17] J. D. Brunner and G. Craciun, Robust persistence and permanence of polynomial and power law dynamical systems, SIAM J. Appl. Math., 78 (2018), 801-825. · Zbl 1385.37031
[18] G. Craciun, Polynomial dynamical systems as reaction networks and toric differential inclusions, SIAM J. Appl. Algebra Geom., 3 (2019), 87-106. · Zbl 1412.37035
[19] P. Y. Yu and G. Craciun, Mathematical analysis of chemical reaction systems, Isr. J. Chem, 58 (2018), 733-741.
[20] M. D. Johnston, A computational approach to steady state correspondence of regular and generalized mass action systems, Bull. Math. Biol., 77 (2015), 1065-1100. · Zbl 1327.80016
[21] C. Conradi, J. Saez-Rodriguez, E. D. Gilles, et al., Using chemical reaction network theory to discard a kinetic mechanism hypothesis, IEE Proc.-Syst. Biol., 152 (2005), 243-248.
[22] N. I. Markevich, J. B. Hoek and B. N. Kholodenko, Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades, J. Cell. Biol., 164 (2004), 353-359.
[23] D. F. Anderson, A proof of the global attractor conjecture in the single linkage class case, SIAM J. Appl. Math., 71 (2011), 1487-1508. · Zbl 1227.92013
[24] M. Gopalkrshnan, E. Miller and A. Shiu, A geometric approach to the global attractor conjecture, SIAM J. Appl. Dyn. Syst., 13 (2013), 758-797. · Zbl 1301.34063
[25] G. Craciun, F. Nazarov and C. Pantea, Persistence and permanence of mass-action and power-law dynamical systems, SIAM J. Appl. Math., 73 (2013), 305-329. · Zbl 1277.37106
[26] C. Pantea, On the persistence and global stability of mass-action systems, SIAM J. Math. Anal., 44 (2012), 1636-1673. · Zbl 1316.37041
[27] G. Craciun, Toric Differential Inclusions and a Proof of the Global Attractor Conjecture, ArXiv e-prints, 1-41. arXiv:1501.02860. Available
[28] S. Müller, J. Hofbauer and G. Regensburger, On the bijectivity of families of exponential/generalized polynomial maps, SIAM J. Appl. Algebra Geom., 3 (2019), 412-438. · Zbl 1419.26001
[29] V. Guillemin and A. Pollack, Differential Topology, Prentice-Hall, 1974. · Zbl 0361.57001
[30] A. R. Shastri, Elements of Differential Topology, CRC Press, 2011. · Zbl 1222.57001
[31] B. Boros, J. Hofbauer and S. Müller, On global stability of the Lotka reactions with generalized mass-action kinetics, Acta Appl. Math., 151 (2017), 53-80. · Zbl 1398.34082
[32] B. Boros, J. Hofbauer, S. Müller, et al., The center problem for the Lotka reactions with generalized mass-action kinetics, Qual. Theo. Dyn. Syst., 17 (2018), 403-410. · Zbl 1402.34033
[33] B. Boros; J. Hofbauer; S. Müller, t al., Planar S-systems: Global stability and the center proble, Discrete Contin. Dyn. Syst. Ser. A, 39, 707-727 (2019) · Zbl 1421.34038 · doi:10.3934/dcds.2019029
This reference list is based on information provided by the publisher or from digital mathematics libraries. Its items are heuristically matched to zbMATH identifiers and may contain data conversion errors. In some cases that data have been complemented/enhanced by data from zbMATH Open. This attempts to reflect the references listed in the original paper as accurately as possible without claiming completeness or a perfect matching.