Genome wide orthology inference and dNdS estimation
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Updated
Oct 10, 2023 - R
Genome wide orthology inference and dNdS estimation
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
🚀 R interface for SSW, a fast implementation of the Smith-Waterman algorithm using SIMD
Bioinformatic tool to predict structural protein-protein interfaces
A computational pipeline to map tagmap-insertions
Simple shiny app for protease cleavage sites in proteins visualization. Could be helpfull on hplc-ms/ms based experiment design step. In addition to this, some basic tools for protein/peptide properties calculation and sequence data (pre)processing are provided.
Dans le cadre de la mobilité quotidienne, application de la bibliothèque Traminer pour l'analyse de séquences d'activités issues de l'Enquête Déplacements Grand Territoire (EDGT44). Le cas de l'Aire Urbaine de Nantes.
Generalized Pair Hidden Markov Chain Model (GPHMM)
Differential Gene Expression, Phylogenetic tree, Sequence Alignments, Biostatistics, Bioinformatic
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
CRAN R Packaged published 2021. Sequence Alignment with Non-Uniform Time Intervals: an algorithm for the comparison of two sequences in time.
Base librarys for sequencing data analysis.
An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.
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