Official git repository for Biopython (originally converted from CVS)
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Updated
Sep 22, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
Neural Networks for Protein Sequence Alignment
Comparative Genomics Toolkit 3
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Scoring multiple sequence alignments with Python
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style
Papillomavirus genome annotation tool
A python library for decomposing and visualizing tandem repeat sequences
The research of accuracy of searching cycles methods in symbolic sequences (time series) with presence of random noises.
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
Automatically Adjudicate Any And All Arbitrary Annotations, Astutely Adjoin Abutting Alignments, And Also Amputate Anything Amiss (AAAAAAAAAAAAAAAA)
MIGA is a Python package that provides a MSA (Multiple Sequence Alignment) mutual information genetic algorithm optimizer. It sorts two MSAs in a way that maximize or minimize their mutual information. The genetic algorithm solvers may run on both CPU and Nvidia GPUs.
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