Koskela, Jere Zig-zag sampling for discrete structures and nonreversible phylogenetic MCMC. (English) Zbl 07633200 J. Comput. Graph. Stat. 31, No. 3, 684-694 (2022). MSC: 62-XX × Cite Format Result Cite Review PDF Full Text: DOI arXiv OA License
Simper, Mackenzie; Palacios, Julia A. An adjacent-swap Markov chain on coalescent trees. (English) Zbl 1501.60038 J. Appl. Probab. 59, No. 4, 1243-1260 (2022). MSC: 60J10 60J90 62F15 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Koskela, Jere; Jenkins, Paul A.; Johansen, Adam M.; Spanò, Dario Erratum to: “Asymptotic genealogies of interacting particle systems with an application to sequential Monte Carlo”. (English) Zbl 1497.60057 Ann. Stat. 50, No. 4, 2467-2468 (2022). MSC: 60G35 60J90 60K35 62M20 × Cite Format Result Cite Review PDF Full Text: DOI
Kamm, Jack; Terhorst, Jonathan; Durbin, Richard; Song, Yun S. Efficiently inferring the demographic history of many populations with allele count data. (English) Zbl 1441.62919 J. Am. Stat. Assoc. 115, No. 531, 1472-1487 (2020). MSC: 62P25 92D25 × Cite Format Result Cite Review PDF Full Text: DOI OA License
Koskela, Jere; Jenkins, Paul A.; Johansen, Adam M.; Spanò, Dario Asymptotic genealogies of interacting particle systems with an application to sequential Monte Carlo. (English) Zbl 1462.60051 Ann. Stat. 48, No. 1, 560-583 (2020); erratum ibid. 50, No. 4, 2467-2468 (2022). MSC: 60G35 60J90 60K35 62M20 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Everitt, Richard G.; Culliford, Richard; Medina-Aguayo, Felipe; Wilson, Daniel J. Sequential Monte Carlo with transformations. (English) Zbl 1437.62108 Stat. Comput. 30, No. 3, 663-676 (2020). MSC: 62F15 65C05 62L12 × Cite Format Result Cite Review PDF Full Text: DOI arXiv OA License
Favaro, Stefano; Feng, Shui; Jenkins, Paul A. Bayesian nonparametric analysis of Kingman’s coalescent. (English. French summary) Zbl 1426.62315 Ann. Inst. Henri Poincaré, Probab. Stat. 55, No. 2, 1087-1115 (2019). MSC: 62P10 62G05 62C10 62M05 92D10 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Koskela, Jere; Jenkins, Paul A.; Spanò, Dario Bayesian non-parametric inference for \(\Lambda\)-coalescents: posterior consistency and a parametric method. (English) Zbl 1419.62063 Bernoulli 24, No. 3, 2122-2153 (2018). MSC: 62G05 60G57 62F15 62G20 62M10 65C05 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Parag, Kris V.; Pybus, Oliver G. Optimal point process filtering and estimation of the coalescent process. (English) Zbl 1370.92094 J. Theor. Biol. 421, 153-167 (2017). MSC: 92D10 92D15 62P10 62F15 62M20 × Cite Format Result Cite Review PDF Full Text: DOI Link
Merle, C.; Leblois, R.; Rousset, F.; Pudlo, P. Resampling: an improvement of importance sampling in varying population size models. (English) Zbl 1369.92004 Theor. Popul. Biol. 114, 70-87 (2017). MSC: 92B15 92-08 62P10 62D05 × Cite Format Result Cite Review PDF Full Text: DOI arXiv HAL
Jones, Graham Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent. (English) Zbl 1357.92057 J. Math. Biol. 74, No. 1-2, 447-467 (2017). MSC: 92D15 92D10 62P10 62F15 × Cite Format Result Cite Review PDF Full Text: DOI DOI OA License
Crane, Harry The ubiquitous Ewens sampling formula. (English) Zbl 1442.60010 Stat. Sci. 31, No. 1, 1-19 (2016). MSC: 60C05 60G09 60G57 62G05 62F15 62P10 92D15 × Cite Format Result Cite Review PDF Full Text: DOI Euclid
Guindon, Stéphane; Guo, Hongbin; Welch, David Demographic inference under the coalescent in a spatial continuum. (English) Zbl 1366.92105 Theor. Popul. Biol. 111, 43-50 (2016). MSC: 92D25 62P10 × Cite Format Result Cite Review PDF Full Text: DOI DOI OA License
Thompson, Katherine L.; Linnen, Catherine R.; Kubatko, Laura Tree-based quantitative trait mapping in the presence of external covariates. (English) Zbl 1360.92015 Stat. Appl. Genet. Mol. Biol. 15, No. 6, 473-490 (2016). MSC: 92B15 62P10 62F15 × Cite Format Result Cite Review PDF Full Text: DOI
Sargsyan, Ori An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations. (English) Zbl 1345.92097 J. Math. Biol. 70, No. 4, 913-956 (2015). MSC: 92D10 92D15 62P10 62F15 × Cite Format Result Cite Review PDF Full Text: DOI
Palacios, Julia A.; Minin, Vladimir N. Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies. (English) Zbl 1274.62852 Biometrics 69, No. 1, 8-18 (2013). MSC: 62P10 92D25 62G99 62G05 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Eldon, Bjarki Estimation of parameters in large offspring number models and ratios of coalescence times. (English) Zbl 1403.92137 Theor. Popul. Biol. 80, No. 1, 16-28 (2011). MSC: 92D10 92D15 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Hobolth, Asger; Uyenoyama, Marcy K.; Wiuf, Carsten Importance sampling for the infinite sites model. (English) Zbl 1276.62074 Stat. Appl. Genet. Mol. Biol. 7, No. 1, Article No. 32, 24 p. (2008). MSC: 62P10 92D10 × Cite Format Result Cite Review PDF Full Text: DOI Link
Chen, Yuguo; Xie, Junyi; Liu, Jun S. Stopping-time resampling for sequential Monte Carlo methods. (English) Zbl 1069.62089 J. R. Stat. Soc., Ser. B, Stat. Methodol. 67, No. 2, 199-217 (2005). MSC: 62P10 62L99 65C05 92D10 65C60 × Cite Format Result Cite Review PDF Full Text: DOI
Stephens, Matthew; Donnelly, Peter Inference in molecular population genetics. (With discussion). (English) Zbl 0962.62107 J. R. Stat. Soc., Ser. B, Stat. Methodol. 62, No. 4, 605-655 (2000). MSC: 62P10 92D10 65C40 × Cite Format Result Cite Review PDF Full Text: DOI
Griffiths, R. C.; Tavaré, Simon The ages of mutations in gene trees. (English) Zbl 0948.92016 Ann. Appl. Probab. 9, No. 3, 567-590 (1999). MSC: 92D15 60J70 92D10 62M05 92D20 65C05 × Cite Format Result Cite Review PDF Full Text: DOI
Griffiths, R. C.; Tavaré, S. Monte Carlo inference methods in population genetics. (English) Zbl 0853.92014 Math. Comput. Modelling 23, No. 8-9, 141-158 (1996). MSC: 92D15 92D20 92D10 62P10 65C05 × Cite Format Result Cite Review PDF Full Text: DOI