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From parallelism to nonuniversality: an unconventional trajectory. (English) Zbl 1486.68006

Adamatzky, Andrew (ed.) et al., From astrophysics to unconventional computation. Essays presented to Susan Stepney on the occasion of her 60th birthday. Cham: Springer. Emerg. Complex. Comput. 35, 123-156 (2020).

MSC: 68-03 01A70 68Q07 68Q09

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Klinge, Titus H.; Lathrop, James I.; Lutz, Jack H.

Robust biomolecular finite automata. (English) Zbl 1432.68148

Theor. Comput. Sci. 816, 114-143 (2020).

MSC: 68Q07 68Q45

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Waldmajer, Jacek; Bonikowski, Zbigniew; Sakowski, Sebastian

Theory of tailor automata. (English) Zbl 1423.68268

Theor. Comput. Sci. 785, 60-82 (2019).

MSC: 68Q45 68Q05 92D20

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Genova, Daniela; Hoogeboom, Hendrik Jan

Enforcing regular languages. (English) Zbl 1378.68103

Fundam. Inform. 154, No. 1-4, 131-144 (2017).

MSC: 68Q45

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Genova, Daniela; Hoogeboom, Hendrik Jan

Finite language forbidding-enforcing systems. (English) Zbl 1489.68125

Kari, Jarkko (ed.) et al., Unveiling dynamics and complexity. 13th conference on computability in Europe, CiE 2017, Turku, Finland, June 12–16, 2017. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 10307, 258-269 (2017).

MSC: 68Q45 68Q07

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Du, Ke-Lin; Swamy, M. N. S.

Search and optimization by metaheuristics. Techniques and algorithms inspired by nature. (English) Zbl 1351.90002

Basel: Birkhäuser/Springer (ISBN 978-3-319-41191-0/hbk; 978-3-319-41192-7/ebook). xxi, 434 p. (2016).

Reviewer: Vladimír Lacko (Košice)

MSC: 90-01 90C59 90B40 74Pxx

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Ellis-Monaghan, Joanna A.; McDowell, Andrew; Moffatt, Iain; Pangborn, Greta

DNA origami and the complexity of Eulerian circuits with turning costs. (English) Zbl 1415.68081

Nat. Comput. 14, No. 3, 491-503 (2015).

MSC: 68Q05 05C45 05C85 68Q25 90C27 92D20

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Fratto, Brian E.; Guz, Nataliia; Katz, Evgeny

Biomolecular computing realized in parallel flow systems: enzyme-based double Feynman logic gate. (English) Zbl 1376.68040

Parallel Process. Lett. 25, No. 1, Article ID 1540001, 9 p. (2015).

MSC: 68Q05 68Q10

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Rogozhin, Yurii; Alhazov, Artiom; Burtseva, Lyudmila; Cojocaru, Svetlana; Colesnicov, Alexandru; Malahov, Ludmila

P system computational model as framework for hybrid (membrane-quantum) computations. (English) Zbl 1457.68107

Gheorghe, Marian (ed.) et al., Membrane computing. 15th international conference, CMC 2014, Prague, Czech Republic, August 20–22, 2014. Revised selected papers. Cham: Springer. Lect. Notes Comput. Sci. 8961, 373-384 (2014).

MSC: 68Q07 68Q10 81P68

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Krasiński, Tadeusz; Sakowski, Sebastian; Waldmajer, Jacek; Popławski, Tomasz

Arithmetical analysis of biomolecular finite automaton. (English) Zbl 1286.68288

Fundam. Inform. 128, No. 4, 463-474 (2013).

MSC: 68Q45 68Q05

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Gilbert, David; Heiner, Monika; Liu, Fei; Saunders, Nigel

Colouring space – a coloured framework for spatial modelling in systems biology. (English) Zbl 1381.92035

Colom, José-Manuel (ed.) et al., Application and theory of Petri nets and concurrency. 34th international conference, PETRI NETS 2013, Milan, Italy, June 24–28, 2013. Proceedings. Berlin: Springer (ISBN 978-3-642-38696-1/pbk). Lecture Notes in Computer Science 7927, 230-249 (2013).

MSC: 92C42 68Q85

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Xie, Jiang; Zhang, Wu; Zhang, Shihua; Wen, Tieqiao

A parallel method for querying target subnetwork in a biomolecular network. (English) Zbl 1334.92164

Int. J. Numer. Anal. Model. 9, No. 2, 326-337 (2012).

MSC: 92C42 05C82

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Genova, Daniela; Mahalingam, Kalpana

Generating DNA code words using forbidding and enforcing systems. (English) Zbl 1374.68213

Dediu, Adrian-Horia (ed.) et al., Theory and practice of natural computing. First international conference, TPNC 2012, Tarragona, Spain, October 2–4, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-33859-5/pbk). Lecture Notes in Computer Science 7505, 147-160 (2012).

MSC: 68Q05 92D20

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Kan, Anton; Shohda, Koh-ichiroh; Suyama, Akira

A DNA based molecular logic gate capable of a variety of logical operations. (English) Zbl 1372.68100

Stefanovic, Darko (ed.) et al., DNA computing and molecular programming. 18th international conference, DNA 18, Aarhus, Denmark, August 14–17, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-32207-5/pbk). Lecture Notes in Computer Science 7433, 86-97 (2012).

MSC: 68Q05 68Q10 94C10

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Genova, Daniela

Forbidding sets and normal forms for language forbidding-enforcing systems. (English) Zbl 1350.68169

Dediu, Adrian-Horia (ed.) et al., Language and automata theory and applications. 6th international conference, LATA 2012, A Coruña, Spain, March 5–9, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-28331-4/pbk). Lecture Notes in Computer Science 7183, 289-300 (2012).

MSC: 68Q45

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Genova, Daniela

Defining languages by forbidding-enforcing systems. (English) Zbl 1344.68118

Löwe, Benedikt (ed.) et al., Models of computation in context. 7th conference on computability in Europe, CiE 2011, Sofia, Bulgaria, June 27 – July 2, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-21874-3/pbk). Lecture Notes in Computer Science 6735, 92-101 (2011).

MSC: 68Q45 68Q05

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Heiner, Monika; Gilbert, David

How Petri nets might enhance your systems biology toolkit. (English) Zbl 1332.92021

Kristensen, Lars M. (ed.) et al., Applications and theory of Petri nets. 32nd international conference, PETRI NETS 2011, Newcastle, UK, June 20–24, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-21833-0/pbk). Lecture Notes in Computer Science 6709, 17-37 (2011).

MSC: 92C42 68Q85

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Majumder, Urmi; Reif, John H.

Design of a biomolecular device that executes process algebra. (English) Zbl 1214.68250

Nat. Comput. 10, No. 1, 447-466 (2011).

MSC: 68Q85 68Q05 92C40 92D20

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Reif, John H.; Majumder, Urmi

Isothermal reactivating whiplash PCR for locally programmable molecular computation. (English) Zbl 1205.68155

Nat. Comput. 9, No. 1, 183-206 (2010).

MSC: 68Q10 68U99

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Reif, John H.; Sahu, Sudheer

Autonomous programmable DNA nanorobotic devices using DNAzymes. (English) Zbl 1178.68325

Theor. Comput. Sci. 410, No. 15, 1428-1439 (2009).

MSC: 68Q45 68U99

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Hirabayashi, Miki; Ohashi, Hirotada; Kubo, Tai

Experimental analysis of the basic idea on the transcription-based diagnostic automata controlled by programmed molecules. (English) Zbl 1154.68439

Nat. Comput. 7, No. 3, 403-421 (2008).

MSC: 68Q45 68Q10

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Manca, Vincenzo; Franco, Giuditta

Computing by polymerase chain reaction. (English) Zbl 1130.92026

Math. Biosci. 211, No. 2, 282-298 (2008).

MSC: 92C40

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Chen, Junghuei (ed.); Jonoska, Nataša (ed.); Rozenberg, Grzegorz (ed.)

Nanotechnology: science and computation. Dedicated to Nadrian C. Seeman on the occasion of his 60th birthday. (English) Zbl 1134.68015

Natural Computing Series. Berlin: Springer (ISBN 978-3-540-30295-7/hbk). xi, 391 p. (2006).

MSC: 68M99 68Q10 68-06

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Margenstern, Maurice; Verlan, Sergey; Rogozhin, Yurii

Time-varying distributed H systems: an overview. (English) Zbl 1102.68030

Fundam. Inform. 64, No. 1-4, 291-306 (2005).

MSC: 68Q05 68Q10 68Q42

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Ellis-Monaghan, Joanna

Transition polynomials, double covers, and biomolecular computing. (English) Zbl 1062.05086

Congr. Numerantium 166, 181-192 (2004).

MSC: 05C45 05C38 92C40

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Gentle, James E. (ed.); Härdle, Wolfgang (ed.); Mori, Yuichi (ed.)

Handbook of computational statistics. Concepts and methods. (English) Zbl 1066.62001

Berlin: Springer (ISBN 3-540-40464-3/hbk). xii, 1070 p. (2004).

Reviewer: Wolfgang zu Castell (Neuherberg)

MSC: 62-00 65C60 62-01 65-00 62-06

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Greenberg, Ronald I.

Fast and space-efficient location of heavy or dense segments in run-length encoded sequences (extended abstract). (English) Zbl 1276.68179

Warnow, Tandy (ed.) et al., Computing and combinatorics. 9th annual international conference, COCOON 2003, Big Sky, MT, USA, July 25–28, 2003. Proceedings. Berlin: Springer (ISBN 3-540-40534-8/pbk). Lecture Notes in Computer Science 2697, 528-536 (2003).

MSC: 68W32 68Q25 68U10 92C55 92D20

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Tarakanov, Alexander O.; Skormin, Victor A.; Sokolova, S. P.

Immunocomputing. Principles and applications. (English) Zbl 1040.68063

New York, NY: Springer (ISBN 0-387-95533-X/hbk). xi, 193 p. (2003).

Reviewer: Damas Gruska (Bratislava)

MSC: 68Q99 68-01

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Amos, Martyn; Păun, Gheorghe; Rozenberg, Grzegorz; Salomaa, Arto

Topics in the theory of DNA computing. (English) Zbl 1061.68048

Theor. Comput. Sci. 287, No. 1, 3-38 (2002).

MSC: 68Q05 68Q10 92D20

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Zimmermann, Karl-Heinz

Efficient DNA sticker algorithms for NP-complete graph problems. (English) Zbl 1001.68092

Comput. Phys. Commun. 144, No. 3, 297-309 (2002).

MSC: 68R10 68Q10 05C45

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Rambidi, Nicholas G.

Biomolecular nonlinear dynamic mechanisms as a foundation for human traits of information processing machine. (English) Zbl 0996.92009

Discrete Dyn. Nat. Soc. 6, No. 4, 263-279 (2001).

MSC: 92C20 68Q05 92C40 68U99

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Full Text: DOI EuDML

Found 31 Documents (Results 1–31)

From parallelism to nonuniversality: an unconventional trajectory. (English) Zbl 1486.68006

Robust biomolecular finite automata. (English) Zbl 1432.68148

Theory of tailor automata. (English) Zbl 1423.68268

Enforcing regular languages. (English) Zbl 1378.68103

Finite language forbidding-enforcing systems. (English) Zbl 1489.68125

Search and optimization by metaheuristics. Techniques and algorithms inspired by nature. (English) Zbl 1351.90002

DNA origami and the complexity of Eulerian circuits with turning costs. (English) Zbl 1415.68081

Biomolecular computing realized in parallel flow systems: enzyme-based double Feynman logic gate. (English) Zbl 1376.68040

P system computational model as framework for hybrid (membrane-quantum) computations. (English) Zbl 1457.68107

Arithmetical analysis of biomolecular finite automaton. (English) Zbl 1286.68288

Colouring space – a coloured framework for spatial modelling in systems biology. (English) Zbl 1381.92035

A parallel method for querying target subnetwork in a biomolecular network. (English) Zbl 1334.92164

Generating DNA code words using forbidding and enforcing systems. (English) Zbl 1374.68213

A DNA based molecular logic gate capable of a variety of logical operations. (English) Zbl 1372.68100

Forbidding sets and normal forms for language forbidding-enforcing systems. (English) Zbl 1350.68169

Defining languages by forbidding-enforcing systems. (English) Zbl 1344.68118

How Petri nets might enhance your systems biology toolkit. (English) Zbl 1332.92021

Design of a biomolecular device that executes process algebra. (English) Zbl 1214.68250

Isothermal reactivating whiplash PCR for locally programmable molecular computation. (English) Zbl 1205.68155

Autonomous programmable DNA nanorobotic devices using DNAzymes. (English) Zbl 1178.68325

Experimental analysis of the basic idea on the transcription-based diagnostic automata controlled by programmed molecules. (English) Zbl 1154.68439

Computing by polymerase chain reaction. (English) Zbl 1130.92026

Nanotechnology: science and computation. Dedicated to Nadrian C. Seeman on the occasion of his 60th birthday. (English) Zbl 1134.68015

Time-varying distributed H systems: an overview. (English) Zbl 1102.68030

Transition polynomials, double covers, and biomolecular computing. (English) Zbl 1062.05086

Handbook of computational statistics. Concepts and methods. (English) Zbl 1066.62001

Fast and space-efficient location of heavy or dense segments in run-length encoded sequences (extended abstract). (English) Zbl 1276.68179

Immunocomputing. Principles and applications. (English) Zbl 1040.68063

Topics in the theory of DNA computing. (English) Zbl 1061.68048

Efficient DNA sticker algorithms for NP-complete graph problems. (English) Zbl 1001.68092

Biomolecular nonlinear dynamic mechanisms as a foundation for human traits of information processing machine. (English) Zbl 0996.92009

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