Knotoids and protein structure. (English) Zbl 1447.92302
Flapan, Erica (ed.) et al., Topology and geometry of biopolymers. AMS special session on topology of biopolymers, Northeastern University, Boston, MA, USA, April 21–22, 2018. Providence, RI: American Mathematical Society (AMS). Contemp. Math. 746, 185-199 (2020).
Summary: Many proteins form open knots. To study and classify proteins in terms of their topology, the protein chain needs to be artificially closed in order to analyze it as a knot. The theory of knotoids provides a workaround to this approach that gives a more refined overview of the topology of knotted proteins. In this review we explain how to analyze open protein chains using the theory of knotoids.
For the entire collection see [Zbl 1435.57001].
For the entire collection see [Zbl 1435.57001].
MSC:
| 92D20 | Protein sequences, DNA sequences |
| 57K10 | Knot theory |
| 57Z10 | Relations of manifolds and cell complexes with biology |
| 92-02 | Research exposition (monographs, survey articles) pertaining to biology |
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