Summary: Topology sheds new light on the emergence of unidirectional edge waves in a variety of physical systems, from condensed matter to artificial lattices. Waves observed in geophysical flows are also robust to perturbations, which suggests a role for topology. We show a topological origin for two well-known equatorially trapped waves, the Kelvin and Yanai modes, owing to the breaking of time-reversal symmetry by Earth’s rotation. The nontrivial structure of the bulk Poincaré wave modes encoded through the first Chern number of value 2 guarantees existence for these waves. This invariant demonstrates that ocean and atmospheric waves share fundamental properties with topological insulators and that topology plays an unexpected role in Earth’s climate system.