Summary: The coherent state functional integral for the minisuperspace model of loop quantum cosmology is studied. By the well-established canonical theory, the transition amplitude in the path integral representation of loop quantum cosmology with alternative dynamics can be formulated through group averaging. The effective action and Hamiltonian with higher-order quantum corrections are thus obtained. It turns out that for a nonsymmetric Hamiltonian constraint operator, the Moyal (star)-product emerges naturally in the effective Hamiltonian. For the corresponding symmetric Hamiltonian operator, the resulted effective theory implies a possible quantum cosmological effect in a large scale limit in the alternative dynamical scenario, which coincides with the result in canonical approach. Moreover, the first-order modified Friedmann equation still contains the particular information of alternative dynamics and hence admits the possible phenomenological distinction between the different proposals of quantum dynamics.