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Huge progeny production during the transient of a quasi-species model of viral infection, reproduction and mutation. (English) Zbl 1235.92036

Summary: Eigen’s quasi-species model describes viruses as ensembles of different mutants of a high fitness “master” genotype. Mutants are assumed to have lower fitness than the master type, yet they coexist with it forming the quasi-species. When the mutation rate is sufficiently high, the master type no longer survives and gets replaced by a wide range of mutant types, thus destroying the quasi-species. This is the so-called “error catastrophe”. But natural selection acts on phenotypes, not genotypes, and huge amounts of genotypes yield the same phenotype. An important consequence of this is the appearance of beneficial mutations which increase the fitness of mutants. A model has been recently proposed to describe quasi-species in the presence of beneficial mutations. This model lacks the error catastrophe of Eigen’s model and predicts a steady state in which the viral population grows exponentially. Extinction can only occur if the infectivity of the quasi-species is so low that this exponential is negative. I investigate the transient of this model when infection is started from a small amount of low fitness virions. I prove that, beyond an initial regime where viral population decreases (and can go extinct), the growth of the population is super-exponential. Hence this population quickly becomes so huge that selection due to lack of host cells to be infected begins to act before the steady state is reached. This result suggests that viral infection may widespread before the virus has developed its optimal form.

MSC:

92D15 Problems related to evolution
37N25 Dynamical systems in biology
92C50 Medical applications (general)
92C60 Medical epidemiology

References:

[1] Groves, T.; Ledyard, J., Optimal allocation of public goods: a solution to the ‘free rider’ problem, Econometrica, 45, 783-809 (1977) · Zbl 0363.90015
[2] Koonin, E. V.; Senkevich, T. G.; Dolja, V. V., The ancient virus world and evolution of cells, Biol. Direct, 1, 29 (2006)
[3] Manrubia, S. C.; Lázaro, E., Viral evolution, Phys. Life Rev., 3, 65-92 (2006)
[4] Wilke, C. O., Quasispecies theory in the context of population genetics, BMC Evol. Biol., 5, 44 (2005)
[5] Bull, J. J.; Meyers, L. A.; Lachmann, M., Quasispecies made simple, PLoS Comput. Biol., 1, 450-460 (2005)
[6] Takeuchi, N.; Hogeweg, P., Error-threshold exists in landscapes with lethal mutants, BMC Evol. Biol., 7, 15 (2007)
[7] Manrubia, S. C.; Domingo, E.; Lázaro, E., Pathways to extinction—beyond the error threshold, Phil. Trans. R. Soc., 365, 1943-1952 (2010)
[8] Eigen, M., Self-organization of matter and evolution of biological macromolecules, Naturwissenschaften, 58, 465-523 (1971)
[9] Grande-Pérez, A.; Lázaro, E.; Lowenstein, P.; Domingo, E.; Manrubia, S. C., Suppression of viral infectivity through lethal defection, Proc. Natl. Acad. Sci. USA, 102, 4448-4452 (2005)
[10] Iranzo, J.; Manrubia, S. C., Stochastic extinction of viral infectivity through the action of defectors, Europhys. Lett., 85, 18001 (2009)
[11] Petermann, T.; Ríos, P. D.L., Cluster approximations for epidemic processes: a systematic description of correlations beyond the pair level, J. Theoret. Biol., 229, 1-11 (2004) · Zbl 1440.92065
[12] (Barrat, A.; Barthélemy, M.; Vespignani, A., Dynamical Processes on Complex Networks (2008), Cambridge University Press: Cambridge University Press Cambridge) · Zbl 1198.90005
[13] Aguirre, J.; Manrubia, S. C., Effects of spatial competition on the diversity of a quasispecies, Phys. Rev. Lett., 100, 38106 (2008)
[14] Cases-González, C.; Arribas, M.; Domingo, E.; Lázaro, E., Beneficial effects of population bottlenecks in an RNA virus evolving at increased error rate, J. Mol. Biol., 384, 1120-1129 (2008)
[15] J.A. Cuesta, J. Aguirre, J.A. Capitán, S.C. Manrubia, The struggle for space: viral extinction through competition for cells, Phys. Rev. Lett. (2010) (in press).; J.A. Cuesta, J. Aguirre, J.A. Capitán, S.C. Manrubia, The struggle for space: viral extinction through competition for cells, Phys. Rev. Lett. (2010) (in press).
[16] Eigen, M., Error catastrophe and antiviral strategy, Proc. Natl. Acad. Sci. USA, 99, 13374-13376 (2002)
[17] Gavrilets, S., Fitness Landscapes and the Origin of Species (2004), Princeton University Press: Princeton University Press Princeton
[18] Manrubia, S. C.; Lázaro, E.; Pérez-Mercader, J.; Escarmís, C.; Domingo, E., Fitness distributions in exponentially growing asexual populations, Phys. Rev. Lett., 90, 188102 (2003)
[19] Kimmel, M.; Axelrod, D. E., Branching Processes in Biology (2002), Springer: Springer New York · Zbl 0994.92001
[20] Seneta, E., Non-Negative Matrices and Markov Chains (2006), Springer: Springer New York · Zbl 1099.60004
[21] (Domingo, E., Quasispecies: Concept and Implications for Virology (2006), Springer: Springer Berlin)
[22] Crotty, S.; Cameron, C. E.; Andino, R., RNA virus error catastrophe: direct molecular test by using ribavirin, Proc. Natl. Acad. Sci. USA, 98, 6895-6900 (2001)
[23] Flajolet, P.; Sedgewick, R., Analytic Combinatorics (2009), Cambridge University Press: Cambridge University Press Cambridge · Zbl 1165.05001
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