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Modeling and identification of a nonlinear hybrid dynamical system in batch fermentation of glycerol. (English) Zbl 1225.37110

Summary: A nonlinear hybrid dynamical system is established to describe the batch culture of glycerol to \(1,3\)-propanediol (\(1,3\)-PD) by Klebsiella pneumoniae (K. pneumoniae), in which glycerol is assumed to pass the cell membrane by passive diffusion coupled with facilitated transport and transport mechanism of \(1,3\)-PD is assumed to be uncertain. The existence, uniqueness and continuity of solutions are also discussed. To infer the most reasonable transport mechanism of \(1,3\)-PD, a system identification model consisting of both discrete and continuous variables is proposed. Additionally, we construct a two-phase optimization algorithm on the basis of modified complex method together with very fast simulated annealing technology. Numerical results show that it is most reasonable for \(1,3\)-PD to pass the cell membrane by passive diffusion coupled with facilitated transport and that the optimization algorithm is valid.

MSC:

37N25 Dynamical systems in biology
92C40 Biochemistry, molecular biology
34A12 Initial value problems, existence, uniqueness, continuous dependence and continuation of solutions to ordinary differential equations
90C90 Applications of mathematical programming
93A30 Mathematical modelling of systems (MSC2010)
93B30 System identification
Full Text: DOI

References:

[1] Biebl, H.; Marten, S.; Hippe, H.; Deckwer, W. D., Glycerol conversion to 1,3-propanediol by newly isolated clostridia, Appl. Microbiol. Biotechnol., 36, 592-597 (1992)
[2] G. Gottschalk, B. Averhoff, Process for the microbial preparation of 1,3-propanediol from glycerol, European patent NO. EP 0373230 A1, 1990.; G. Gottschalk, B. Averhoff, Process for the microbial preparation of 1,3-propanediol from glycerol, European patent NO. EP 0373230 A1, 1990.
[3] Homann, T.; Tag, C.; Biebl, H.; Deckwer, W. D.; Schink, B., Fermentation of glycerol to 1,3-propanediol by Klebsiella and Citrobacter strains, Appl. Microbiol. Biotechnol., 33, 121-126 (1990)
[4] Witt, U.; Miiller, R. J.; Augusta, J.; Widdecke, H.; Deckwer, W. D., Synthesis, properties and biodegradability of polyesters based on 1,3-propanediol, Makro-Mol. Chem. Phys., 195, 793-802 (1994)
[5] Xiu, Z., Research progress on the production of 1,3-propanediol by fermentation, Microbiology, 27, 300-302 (2000)
[6] Zeng, A.-P.; Ross, A.; Biebl, H.; Tag, C.; Guenzel, B.; Deckwer, W.-D., Multiple probuct inhibition and growth modeling of Clostridium butyricum and Klebsiella pneumoniae in glycerol fermentation, Biotechnol. Bioeng., 44, 902-911 (1994)
[7] Zeng, A.-P.; Biebl, H., Bulk-chemicals from biotechnology: the case of microbial production of 1,3-propanediol and the new trends, Adv. Biochem. Eng. Biotechnol., 74, 237-433 (2002)
[8] Zeng, A.-P.; Deckwer, W. D., A kinetic model for substrate and energy consumption of microbial growth under substrate-sufficient condition, Biotechnol. Prog., 11, 71-79 (1995)
[9] Xiu, Z.; Zeng, A.; An, L., Mathematical modelling of kinetics and research on multiplicity of glycerol bioconversion to 1,3-propanediol, J. Dalian Univ. Technol., 40, 428-433 (2000)
[10] Gao, C.; Feng, E.; Wang, Z.; Xiu, Z., Parameters identification problem of the nonlinear dynamical system in microbial continuous cultures, Appl. Math. Comput., 169, 476-484 (2005) · Zbl 1074.92012
[11] Wang, G.; Feng, E.; Xiu, Z., Vector measure for explicit nonlinear impulsive system of glycerol bioconversion in fed-batch cultures and its parameter identification, Appl. Math. Comput., 188, 1151-1160 (2007) · Zbl 1113.92031
[12] Gong, Z.; Liu, C.; Feng, E.; Zhang, Q., Computational method for inferring objective function of glycerol metabolism in Klebsiella pneumoniae, Comput. Biol. Chem., 33, 1, 1-6 (2008) · Zbl 1158.92013
[13] Zhang, Q.; Xiu, Z., Metabolic pathway analysis of glycerol metabolism in Klebsiella pneumoniae incorporating oxygen regulatory system, Biotechnol. Prog., 25, 1, 103-115 (2009)
[14] B. Gtinzel, Mikrobielle Herstellung von 1,3-Propandiol durch Clostridium butyricum und adsorptive Abtremutng von Diolen, Ph.D. Dissertation, TU Braunschweig, Germany, 1991.; B. Gtinzel, Mikrobielle Herstellung von 1,3-Propandiol durch Clostridium butyricum und adsorptive Abtremutng von Diolen, Ph.D. Dissertation, TU Braunschweig, Germany, 1991.
[15] Sun, Y.; Qi, W.; Teng, H.; Xiu, Z.; Zeng, A., Mathematical modeling of glycerol fermentation by Klebsiella pneumoniae: concerning enzyme-catalytic reductive pathway and transport of glycerol and 1,3-propanediol across cell membrane, Biochem. Eng. J., 38, 22-32 (2008), B
[16] Gao, C.; Wang, Z.; Feng, E.; Xiu, Z., Parameter indetification and optimization of process for bio-dissimilation of glycerol to 1,3-propanediol in batch culture, J. Dalian Univ. Technol., 46, 5, 771-774 (2006)
[17] Li, X. H.; Feng, E. M.; Xiu, Z., Optimal control and property of nonlinear dynamic system for microorganism in batch culture, OR Trans., 9, 4, 89-96 (2005)
[18] Wang, L.; Ye, J.; Feng, E.; Xiu, Z., An improved model for multistage simulation of glycerol fermentation in batch culture and its parameter identification, Nonlinear Anal. Hybrid Syst., 3, 455-462 (2009) · Zbl 1194.93021
[19] Shan, F.; Feng, E.; Li, Y.; Xiu, Z., Multin stage identification model, algorithm and appication of nonlinear dynaic system, Operations Research and Management Science, 15, 3, 6-12 (2006)
[20] A.-P. Zeng, Quantitative Zellphysiologie, Metabolic Engineering und Modellierung der Glycerinfermentation zu 1,3-Propandiol, Habilitationschrift, Technical University of Braunschweig, Germany, 2000.; A.-P. Zeng, Quantitative Zellphysiologie, Metabolic Engineering und Modellierung der Glycerinfermentation zu 1,3-Propandiol, Habilitationschrift, Technical University of Braunschweig, Germany, 2000.
[21] Gao, Y.; Lygeros, John; Quincampoix, Marc; Seube, Nicolas, Approximate stabilisation of uncertain hybrid systems, Hybrid Syst.: Comput. Control, 2623, 203-215 (2003) · Zbl 1032.93059
[22] Engell, S.; Frehse, G.; Schnieder, E., Nonlinear hybrid dynamical systems: modelling, optimal control, and applications, Modelling, Analysis ans Design of Hybrid Systems, 279, 311-335 (2002) · Zbl 1003.93001
[23] Zhang, L., Fast simulated annealing algorithm and its application, OGP, 32, 5, 654-660 (1997)
[24] Mohammad-Taghi Vakil-Baghmisheh, Alireza Navarbaf, A modified very fast simulated annealing algorithm, in: International Symposium on Telecommunications, 2008, pp. 61-66.; Mohammad-Taghi Vakil-Baghmisheh, Alireza Navarbaf, A modified very fast simulated annealing algorithm, in: International Symposium on Telecommunications, 2008, pp. 61-66.
[25] Lin, E. C.C., Glycerol dissimilation and its regulation in bacteria, Annu. Rev. Microbiol., 30, 535-578 (1976)
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