×

On timed models of gene networks. (English) Zbl 1141.92310

Raskin, Jean-François (ed.) et al., Formal modeling and analysis of timed systems. 5th international conference, FORMATS 2007, Salzburg, Austria, October 3–5, 2007. Proceedings. Berlin: Springer (ISBN 978-3-540-75453-4/pbk). Lecture Notes in Computer Science 4763, 38-52 (2007).
Summary: We present a systematic translation from timed models of genetic regulatory networks into products of timed automata to which one can apply verification tools in order learn about the possible qualitative behaviors of the network under a whole range of uncertain delay parameters. We have developed a tool chain starting from a high-level description of the network down to an exhaustive analysis of its behavior. We have demonstrated the potential applicability of this framework on several examples.
For the entire collection see [Zbl 1138.68007].

MSC:

92C40 Biochemistry, molecular biology
68Q45 Formal languages and automata

Software:

PHAVer
Full Text: DOI