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Estimation and prediction with HIV-treatment interruption data. (English) Zbl 1139.92304

Summary: We consider longitudinal clinical data for HIV patients undergoing treatment interruptions. We use a nonlinear dynamical mathematical model in attempts to fit individual patient data. A statistically-based censored data method is combined with inverse problem techniques to estimate dynamic parameters. The predictive capabilities of this approach are demonstrated by comparing simulations based on estimation of parameters using only half of the longitudinal observations to the full longitudinal data sets.

MSC:

92C50 Medical applications (general)
62N01 Censored data models
62P10 Applications of statistics to biology and medical sciences; meta analysis
62N02 Estimation in survival analysis and censored data

Software:

KELLEY; ODEPACK
Full Text: DOI

References:

[1] Adams, B.M., 2005. Non-parametric parameter estimation and clinical data fitting with a model of HIV Infection. PhD Thesis, NC State University, Raleigh.
[2] Adams, B.M., Banks, H.T., Davidian, M., Kwon, H.D., Tran, H.T., Wynne, S.N., Rosenberg, E.S., 2005. HIV dynamics: Modeling, data analysis, and optimal treatment protocols. J. Comput. Appl. Math. 184(1), 10–49. · Zbl 1075.92030
[3] Adams, B.M., Banks, H.T., Davidian, M., Rosenberg, E.S., 2005. Model fitting and prediction with HIV treatment interruption data, Center for Research in Scientific Computation Technical Report CRSC-TR05-40, NC State University, Raleigh, October. Online: http://www.ncsu.edu/crsc/reports.
[4] Adams, B.M., Banks, H.T., Tran, H.T., Kwon, H., 2004. Dynamic multidrug therapies for HIV: Optimal and STI control approaches. Math. Biosci. Eng. 1(2), 223–241. · Zbl 1060.92034
[5] Aitkin, M., 1981. A note on the regression analysis of censored data. Technometrics 23, 161–163. · doi:10.2307/1268032
[6] Armstrong, S., Fontaine, C., Wilson, A., 2004. 2004 Report on the Global AIDS Epidemic. UNAIDS/Joint United Nations Programme on HIV/AIDS, Geneva, Switzerland. Online: http://www.unaids.org.
[7] Banks, H.T., Kunisch, K., 1989. Estimation Techniques for Distributed Parameter Systems. Birkhauser, Boston. · Zbl 0695.93020
[8] Banks, H.T., Kwon, H., Toivanen, J.A., Tran, H.T., 2006. An SDRE-based estimator approach for HIV feedback control [Technical Report CRSC-TR05-20, NC State University, Raleigh, April]. Optim. Control Appl. Methods 27, 93–121. · doi:10.1002/oca.773
[9] Bonhoeffer, S., Rembiszewski, M., Ortiz, G.M., Nixon, D.F., 2000. Risks and benefits of structured antiretroviral drug therapy interruptions in HIV-1 infection. AIDS 14, 2313–2322. · doi:10.1097/00002030-200010200-00012
[10] Callaway, D.S., Perelson, A.S., 2002. HIV-1 infection and low steady state viral loads. Bull. Math. Biol. 64(1), 29–64. · Zbl 1334.92227 · doi:10.1006/bulm.2001.0266
[11] Dempster, A.P., Laird, N.M., Rubin, D.B., 1977. Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc., Ser. B 39(1), 1–38. · Zbl 0364.62022
[12] Finkel, D.E., 2005. Global optimization with the DIRECT algorithm. PhD Thesis, NC State University, Raleigh. Online: http://www4.ncsu.edu/definkel/research/Direct.m. · Zbl 1146.68386
[13] Hindmarsh, A.C., 1983. Scientific Computing. Chapter ODEPACK, A Systematized Collection of ODE Solvers, North-Holland, Amsterdam, pp. 55–64. Online: http://www.llnl.gov/CASC/odepack/.
[14] Kalbfleisch, J.P., Prentice, R.L., 2002. The Statistical Analysis of Failure Time Data. Wiley, New York. · Zbl 1012.62104
[15] Kassutto, S., Maghsoudi, K., Johnston, M.N., Robbins, G.K., Burgett, N.C., Sax, P.E., Cohen, D., Pae, E., Davis, B., Zachary, K., Basgoz, N., D’agata, E.M.C., DeGruttola, V., Walker, B.D., Rosenberg, E.S., 2006. Longitudinal analysis of clinical markers following antiretroviral therapy initiated during acute or early HIV-1 infection. Clin. Infect. Dis. 42, 1024–1031.
[16] Kelley, C.T., 1999. Iterative methods for optimization. In: Frontiers in Applied Mathematics FR18. SIAM, Philadelphia. · Zbl 0934.90082
[17] Klein, J.P., Moeschberger, M.L., 2003. Survival Analysis: Techniques for Censored and Truncated Data. Springer, New York. · Zbl 1011.62106
[18] Lichterfeld, M., Kaufman, D.E., Yu, G., Mui, S.K., Addo, M.M., Johnston, M.N., Cohen, D., Robbins, G.K., Pae, E., Alter, G., Wurcel, A., Stone, D., Rosenberg, E.S., Walker, B.D., Altfield, M., 2004. Loss of HIV-1-specific CD8+ T-cell proliferation after acute HIV-1 infection and restoration by vaccine-induced HIV-1-specific CD4+ T-cells. J. Exp. Med. 200(6), 701–712.
[19] Lori, F., Lisziewicz, J., 2001. Structured treatment interruptions for the management of HIV infection. J. Am. Med. Assoc. 4286(23), 2981–2987. · doi:10.1001/jama.286.23.2981
[20] McLachlan, G.J., Krishnan, T., 1997. The EM Algorithm and Extensions. Wiley, New York. · Zbl 0882.62012
[21] Norris, P.J., Rosenberg, E.S., 2002. CD4+ T-helper cells and the role they play in viral control. J. Mol. Med. 80, 397–405. · doi:10.1007/s00109-002-0337-3
[22] Nowak, M.A., Bangham, C.R.M., 1996. Population dynamics of immune responses to persistent viruses. Science 272, 74–79. · doi:10.1126/science.272.5258.74
[23] Perelson, A.S., Nelson, P.W., 1999. Mathematical analysis of HIV-1 dynamics in vivo. SIAM Rev. 41(1), 3–44. · Zbl 1078.92502 · doi:10.1137/S0036144598335107
[24] Rosenberg, E.S., Altfield, M., Poon, S.H., Phillips, M.N., Wilkes, B., Eldridge, R.L., Robbins, G.K., D’Aquila, R.D., Goulder, P.J.R., Walker, B.D., 2000. Immune control of HIV-1 after early treatment of acute infection. Nature 407, 523–526.
[25] Schneider, H., 1986. Truncated and Censored Samples from Normal Populations. Marcel Dekker, New York. · Zbl 0601.62052
[26] Wodarz, D., Nowak, M.A., 1999. Specific therapy regimes could lead to long-term immunological control of HIV. Proc. Natl. Acad. Sci. 96(25), 14464–14469. · doi:10.1073/pnas.96.25.14464
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