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Characteristic length of random knotting for cylindrical self-avoiding polygons. (English) Zbl 1065.60501

Summary: We discuss the probability of random knotting for a model of self-avoiding polygons whose segments are given by cylinders of unit length with radius \(r\). We show numerically that the characteristic length of random knotting is roughly approximated by an exponential function of the chain thickness \(r\).

MSC:

60G50 Sums of independent random variables; random walks

References:

[1] Dean, F. B.; Stasiak, A.; Koller, T.; Cozzarelli, N. R., J. Biol. Chem., 260, 4795 (1985)
[2] Wasserman, S. A.; Duncan, J. M.; Cozzarelli, N. R., Science, 229, 171 (1985)
[3] Wasserman, S. A.; Duncan, J. M.; Cozzarelli, N. R., Science, 232, 951 (1986)
[4] Shishido, K.; Komiyama, N.; Ikawa, S., J. Mol. Biol., 195, 215 (1987)
[5] Walba, D. M., Tetrahedron, 41, 3161 (1985)
[6] M. Delbück, in: R.E. Bellman (Ed.), Mathmatical Problems in the Biological Sciences, Proc. Symp. Appl. Math 14 (1962) 55.; M. Delbück, in: R.E. Bellman (Ed.), Mathmatical Problems in the Biological Sciences, Proc. Symp. Appl. Math 14 (1962) 55. · Zbl 0116.00205
[7] Frisch, H. L.; Wasserman, E., J. Amer. Chem. Soc., 83, 3789 (1961)
[8] Vologodskii, A. V.; Lukashin, A. V.; Frank-Kamenetskii, M. D.; Anshelevich, V. V., Sov. Phys. JETP, 39, 1059 (1974)
[9] J. des Cloizeaux, M.L. Mehta, J. Phys. (Paris) 40 (1979) 665.; J. des Cloizeaux, M.L. Mehta, J. Phys. (Paris) 40 (1979) 665.
[10] Michels, J. P.J.; Wiegel, F. W., Phys. Lett. A, 90, 381 (1982)
[11] Le Bret, M., Biopolymers, 19, 619 (1980)
[12] Chen, Y. D., J. Chem. Phys., 74, 2034 (1981)
[13] Chen, Y. D., J. Chem. Phys., 75, 2447 (1981)
[14] Chen, Y. D., J. Chem. Phys., 75, 5160 (1981)
[15] Klenin, K. V.; Vologodskii, A. V.; Anshelevich, V. V.; Dykhne, A. M.; Frank-Kamenetskii, M. D., J. Biomol. Struct. Dyn., 5, 1173 (1988)
[16] Janse van Rensburg, E. J.; Whittington, S. G., J. Phys. A, 23, 3573 (1990) · Zbl 0709.57001
[17] Koniaris, K.; Muthukumar, M., Phys. Rev. Lett., 66, 2211 (1991)
[18] Deguchi, T.; Tsurusaki, K.; Knot, J., Theory and Its Ramifications, 3, 321 (1994) · Zbl 0841.57010
[19] Deguchi, T.; Tsurusaki, K., Phys. Rev. E, 55, 6245 (1997)
[20] Orlandini, E.; Tesi, M. C.; Janse van Rensburg, E. J.; Whittington, S. G., J. Phys. A: Math. Gen., 31, 5953 (1998) · Zbl 0953.82031
[21] Rybenkov, V. V.; Cozzarelli, N. R.; Vologodskii, A. V., Proc. Natl. Acad. Sci. USA, 90, 5307 (1993)
[22] Shaw, S. Y.; Wang, J. C., Science, 260, 533 (1993)
[23] A.Yu. Grosberg, A.R. Khokhlov, Statistical Physics of Macromolecules, AIP Press, 1994.; A.Yu. Grosberg, A.R. Khokhlov, Statistical Physics of Macromolecules, AIP Press, 1994.
[24] Grosberg, A.; Nechaev, S., J. Phys. A: Math. Gen., 25, 4659 (1992) · Zbl 0768.57002
[25] Stiger, D., Biopolymer, 16, 1435 (1977)
[26] Brian, A. A.; Frisch, H. L.; Lerman, L. S., Biopolymer, 20, 1305 (1981)
[27] Yarmoia, E. G.; Zarudnaya, M. I.; Lazurkin, Y. S., J. Biomol. Struct. Dyn., 2, 981 (1985)
[28] T. Deguchi, K. Tsurusaki, Phys. Lett. A 174 (1993) 29; see also, M. Wadati, T. Deguchi, Y. Akutsu, Phys. Rep. 180 (1989) 247.; T. Deguchi, K. Tsurusaki, Phys. Lett. A 174 (1993) 29; see also, M. Wadati, T. Deguchi, Y. Akutsu, Phys. Rep. 180 (1989) 247.
[29] Turaev, V. G., Math. USSR Izvestiya, 35, 411 (1990)
[30] Polyak, M.; Viro, O., Int. Math. Res. Not. No., 11, 445 (1994) · Zbl 0851.57010
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