DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region (Q92202991)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

title

DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Modesto Orozco

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

author name string

Pablo Fernández-Millán

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Federica Battistini

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Aleix Tarrés-Solé

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Sébastien Lyonnais

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Guillermo Iruela

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Elena Ruiz-López

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Yuliana Enciso

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Anna Rubio-Cosials

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Rafel Prohens

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Miquel Pons

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Katalin Tóth

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Germán Rivas

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

publication date

1 July 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

page(s)

6519-6537

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

27 April 2020

start time

22 May 2019

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Mitochondria are physiologically maintained at close to 50 °C.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Protein Flexibility and Synergy of HMG Domains Underlie U-Turn Bending of DNA by TFAM in Solution.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Functional Mitochondria in Health and Disease.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Structural Basis of Mitochondrial Transcription Initiation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Mechanism of Transcription Anti-termination in Human Mitochondria

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Unexpected sequences and structures of mtDNA required for efficient transcription from the first heavy-strand promoter.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

The human mitochondrial transcription factor A is a versatile G-quadruplex binding protein.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Mitochondrial activity and dynamics changes regarding metabolism in ageing and obesity

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Human mitochondrial transcription factors TFAM and TFB2M work synergistically in promoter melting during transcription initiation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Enthalpy-entropy compensation: the role of solvation.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Length heterogeneity at conserved sequence block 2 in human mitochondrial DNA acts as a rheostat for RNA polymerase POLRMT activity

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Human Mitochondrial Transcription Initiation Complexes Have Similar Topology on the Light and Heavy Strand Promoters

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Parmbsc1: a refined force field for DNA simulations

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Mitochondrial Transcription Factor A (TFAM) Binds to RNA Containing 4-Way Junctions and Mitochondrial tRNA.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Multiscale modelling of DNA mechanics

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Disturbed mitochondrial dynamics and neurodegenerative disorders

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

In vitro-reconstituted nucleoids can block mitochondrial DNA replication and transcription.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

NAFlex: a web server for the study of nucleic acid flexibility.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

U-turn DNA bending by human mitochondrial transcription factor A.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Mitochondrial transcription factor A regulates mitochondrial transcription initiation, DNA packaging, and genome copy number

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

The mitochondrial transcription and packaging factor Tfam imposes a U-turn on mitochondrial DNA

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Transcriptional activation by mitochondrial transcription factor A involves preferential distortion of promoter DNA.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Overview of the CCP4 suite and current developments

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

G-quadruplex structures in RNA stimulate mitochondrial transcription termination and primer formation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Biophysical characterizations of human mitochondrial transcription factor A and its binding to tumor suppressor p53.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

23 February 2021

The cost of DNA bending

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Conformational analysis of nucleic acids revisited: Curves+

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

The unique structure of A-tracts and intrinsic DNA bending

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Phasercrystallographic software

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Dynamics of B-DNA on the microsecond time scale

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Production of Selenomethionyl Proteins in Prokaryotic and Eukaryotic Expression Systems

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

An enhanced MITOMAP with a global mtDNA mutational phylogeny

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

What drives proteins into the major or minor grooves of DNA?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Conserved sequence box II directs transcription termination and primer formation in mitochondria

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Coot: model-building tools for molecular graphics

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

DNA binding and bending by HMG boxes: energetic determinants of specificity

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Human mitochondrial transcription factor A binds preferentially to oxidatively damaged DNA

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Trajectory of nucleosomal linker DNA studied by fluorescence resonance energy transfer

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Structural and thermodynamic strategies for site-specific DNA binding proteins

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Binding of human mitochondrial transcription factor A, an HMG box protein, to a four-way DNA junction

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-5

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

In vivo determination of replication origins of human mitochondrial DNA by ligation-mediated polymerase chain reaction

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

In organello footprint analysis of human mitochondrial DNA: human mitochondrial transcription factor A interactions at the origin of replication

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Precise identification of individual promoters for transcription of each strand of human mitochondrial DNA.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Optimised parameters for A-DNA and B-DNA

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

Priming of human mitochondrial DNA replication occurs at the light-strand promoter

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6614842

23 February 2021

Identifiers

DOI

10.1093/NAR/GKZ406

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

PubMed publication ID

31114891

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114891%20AND%20SRC:MED&resulttype=core&format=json