Organizational principles of 3D genome architecture (Q58115647)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30367165%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

Organizational principles of 3D genome architecture (English)

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30 April 2020

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30 April 2020

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30 April 2020

author name string

M Jordan Rowley

series ordinal

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Victor G Corces

series ordinal

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language of work or name

English

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publication date

1 December 2018

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30 April 2020

published in

Nature Reviews Genetics

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30 April 2020

volume

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30 April 2020

issue

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30 April 2020

page(s)

789-800

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An Overview of Genome Organization and How We Got There: from FISH to Hi-C

30 April 2020

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Evolutionarily Conserved Principles Predict 3D Chromatin Organization

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3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.

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Perspectives: using polymer modeling to understand the formation and function of nuclear compartments.

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Predicting chromatin organization using histone marks.

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7 January 2021

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture.

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7 January 2021

Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus.

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7 January 2021

High-resolution mapping of the spatial organization of a bacterial chromosome

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Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing

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Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription.

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Inhibiting eukaryotic transcription: Which compound to choose? How to evaluate its activity?

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Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development

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Allelic reprogramming of 3D chromatin architecture during early mammalian development

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7 January 2021

3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis

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7 January 2021

Organization of the mitotic chromosome

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7 January 2021

Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes.

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7 January 2021

Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

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7 January 2021

Architectural proteins, transcription, and the three-dimensional organization of the genome

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7 January 2021

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

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7 January 2021

The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

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7 January 2021

A Phase Separation Model for Transcriptional Control.

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7 January 2021

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

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7 January 2021

Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs.

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7 January 2021

Classification of intrinsically disordered regions and proteins

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7 January 2021

Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II.

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7 January 2021

Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains

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7 January 2021

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

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7 January 2021

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

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7 January 2021

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

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7 January 2021

Formation of Chromosomal Domains by Loop Extrusion.

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7 January 2021

A CTCF Code for 3D Genome Architecture

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7 January 2021

Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis

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7 January 2021

Self-organization of domain structures by DNA-loop-extruding enzymes

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7 January 2021

Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin

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7 January 2021

Rapid movement and transcriptional re-localization of human cohesin on DNA

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7 January 2021

Cohesin acetylation and Wapl-Pds5 oppositely regulate translocation of cohesin along DNA.

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7 January 2021

Real-time imaging of DNA loop extrusion by condensin.

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7 January 2021

The condensin complex is a mechanochemical motor that translocates along DNA.

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7 January 2021

Establishment of DNA-DNA Interactions by the Cohesin Ring

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7 January 2021

Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA.

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7 January 2021

Two independent modes of chromatin organization revealed by cohesin removal

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7 January 2021

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

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7 January 2021

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension

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7 January 2021

A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.

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7 January 2021

CTCF-Induced Circular DNA Complexes Observed by Atomic Force Microscopy

1 reference

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7 January 2021

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

1 reference

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7 January 2021

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Multiscale 3D Genome Rewiring during Mouse Neural Development

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

A pathway for mitotic chromosome formation.

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

CTCF and cohesin regulate chromatin loop stability with distinct dynamics

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

SMC Progressively Aligns Chromosomal Arms in Caulobacter crescentus but Is Antagonized by Convergent Transcription

1 reference

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7 January 2021

Nonequilibrium Chromosome Looping via Molecular Slip Links

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7 January 2021

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

1 reference

7 January 2021

The Energetics and Physiological Impact of Cohesin Extrusion

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7 January 2021

Evidence for cohesin sliding along budding yeast chromosomes

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7 January 2021

Transcription alters chromosomal locations of cohesin in Saccharomyces cerevisiae

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https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl.

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https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes

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7 January 2021

Getting up to speed with transcription elongation by RNA polymerase II

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7 January 2021

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

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7 January 2021

Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control

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7 January 2021

De novo mutations in the genome organizer CTCF cause intellectual disability.

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7 January 2021

CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer

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7 January 2021

CTCF/cohesin-binding sites are frequently mutated in cancer

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7 January 2021

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

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7 January 2021

CTCF Binding Polarity Determines Chromatin Looping.

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7 January 2021

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

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7 January 2021

Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Enhancer Control of Transcriptional Bursting

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

YY1 Is a Structural Regulator of Enhancer-Promoter Loops

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

YY1 controls Igκ repertoire and B-cell development, and localizes with condensin on the Igκ locus

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Structural Insights into Ring Formation of Cohesin and Related Smc Complexes

1 reference

https://api.crossref.org/works/10.1038%2FS41576-018-0060-8

7 January 2021

Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development

1 reference

12 December 2020

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

1 reference

12 December 2020

Loss of maternal CTCF is associated with peri-implantation lethality of Ctcf null embryos

1 reference

12 December 2020

CTCF: an architectural protein bridging genome topology and function

1 reference

12 December 2020

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation

1 reference

12 December 2020

Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes.

1 reference

12 December 2020

10.1038/S41576-018-0060-8

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30367165%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30367165%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

PubMed publication ID

30367165

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30367165%20AND%20SRC:MED&resulttype=core&format=json