RNA-protein interaction detection in living cells. (Q48106074)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29400715%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

RNA-protein interaction detection in living cells (English)

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14 March 2020

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14 March 2020

1 reference

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14 March 2020

1 reference

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14 March 2020

1 reference

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14 March 2020

author name string

Muthukumar Ramanathan

1 reference

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14 March 2020

Deepti S Rao

1 reference

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14 March 2020

Poornima H Neela

1 reference

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14 March 2020

Brian J Zarnegar

1 reference

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14 March 2020

Smarajit Mondal

1 reference

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14 March 2020

Hui Gai

1 reference

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14 March 2020

Joanna R Kovalski

1 reference

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14 March 2020

Zurab Siprashvili

1 reference

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14 March 2020

Theo D Palmer

1 reference

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14 March 2020

publication date

5 February 2018

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14 March 2020

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14 March 2020

volume

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14 March 2020

issue

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14 March 2020

page(s)

207-212

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Specific RNP capture with antisense LNA/DNA mixmers.

14 March 2020

cites work

1 reference

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10 July 2018

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A versatile tandem RNA isolation procedure to capture in vivo formed mRNA-protein complexes

10 July 2018

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irCLIP platform for efficient characterization of protein-RNA interactions

10 July 2018

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Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Detecting RNA-Protein Interaction Using End-Labeled Biotinylated RNA Oligonucleotides and Immunoblotting

10 July 2018

1 reference

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Zika Virus Infects Human Cortical Neural Progenitors and Attenuates Their Growth

10 July 2018

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An improved smaller biotin ligase for BioID proximity labeling

10 July 2018

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Zika Virus Associated with Microcephaly

10 July 2018

1 reference

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The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

10 July 2018

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Proteomics. Tissue-based map of the human proteome

10 July 2018

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

10 July 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

1 December 2018

https://api.crossref.org/works/10.1038%2FNMETH.4601

inferred from DOI database lookup

7 January 2021

based on heuristic

Directed evolution of APEX2 for electron microscopy and proximity labeling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Human induced pluripotent stem cell-derived cardiomyocytes as an in vitro model for coxsackievirus B3-induced myocarditis and antiviral drug screening platform

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Probing nuclear pore complex architecture with proximity-dependent biotinylation.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Successful conversion of the Bacillus subtilis BirA Group II biotin protein ligase into a Group I ligase

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Systematic identification of regulatory elements in conserved 3' UTRs of human transcripts

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Dynamically reshaping signaling networks to program cell fate via genetic controllers

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Structural insights into the targeting of mRNA GU-rich elements by the three RRMs of CELF1.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Roquin-2 shares functions with its paralog Roquin-1 in the repression of mRNAs controlling T follicular helper cells and systemic inflammation

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Epigenetic regulation by long noncoding RNAs

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Human cerebral cortex development from pluripotent stem cells to functional excitatory synapses

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Diverse roles of host RNA binding proteins in RNA virus replication

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

A more efficient method to generate integration-free human iPS cells

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Invasive three-dimensional organotypic neoplasia from multiple normal human epithelia

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Linking white and grey matter in schizophrenia: oligodendrocyte and neuron pathology in the prefrontal cortex

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Unbiased RNA-protein interaction screen by quantitative proteomics.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

RNA regulons: coordination of post-transcriptional events

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Iron-dependent degradation of apo-IRP1 by the ubiquitin-proteasome pathway

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

From birth to death: the complex lives of eukaryotic mRNAs

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Clinical severity and thermodynamic effects of iron-responsive element mutations in hereditary hyperferritinemia-cataract syndrome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Aptamers as therapeutics.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5886736

Designed arginine-rich RNA-binding peptides with picomolar affinity

14 August 2018

1 reference

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QKI expression is regulated during neuron-glial cell fate decisions.

14 August 2018

1 reference

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The STAT3-Binding Long Noncoding RNA lnc-DC Controls Human Dendritic Cell Differentiation

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4601

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.4601

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29400715%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29400715%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

PubMed publication ID

29400715

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29400715%20AND%20SRC:MED&resulttype=core&format=json