Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection (Q47187816)

11 January 2018

title

Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection (English)

1 reference

11 January 2018

0 references

1 reference

extreme learning machine

1 reference

1 reference

11 January 2018

author name string

Lei Chen

1 reference

11 January 2018

Yu-Hang Zhang

1 reference

11 January 2018

Guohua Huang

1 reference

11 January 2018

Xiaoyong Pan

1 reference

11 January 2018

ShaoPeng Wang

1 reference

11 January 2018

Tao Huang

1 reference

11 January 2018

publication date

14 September 2017

1 reference

11 January 2018

Molecular Genetics and Genomics

published in

1 reference

11 January 2018

SPINGO: a rapid species-classifier for microbial amplicon sequences

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Gene expression regulation by upstream open reading frames and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

AU-rich elements and associated factors: are there unifying principles?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The long noncoding RNA TUG1 regulates blood-tumor barrier permeability by targeting miR-144

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Classification of lung cancer using ensemble-based feature selection and machine learning methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

A tumor-associated fibronectin isoform generated by alternative splicing of messenger RNA precursors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Regulation of circRNA biogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Biogenesis, identification, and function of exonic circular RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Predicting the types of metabolic pathway of compounds using molecular fragments and sequential minimal optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Analysis of Gene Expression Profiles in the Human Brain Stem, Cerebellum and Cerebral Cortex

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Gene expression profiling gut microbiota in different races of humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Identification of compound-protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The RNA binding protein quaking regulates formation of circRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Combining extreme learning machines using support vector machines for breast tissue classification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Monte Carlo feature selection for supervised classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Circular RNAs: Identification, biogenesis and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

A Binary Classifier for Prediction of the Types of Metabolic Pathway of Chemicals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Challenges and Opportunities in Linking Long Noncoding RNAs to Cardiovascular, Lung, and Blood Diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

miRNA oligonucleotide and sponge for miRNA-21 inhibition mediated by PEI-PLL in breast cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Long noncoding RNAs: new players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

circBase: a database for circular RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The specificity of long noncoding RNA expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

RNA-RNA interactions in gene regulation: the coding and noncoding players

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Expanded identification and characterization of mammalian circular RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The intertwining of transposable elements and non-coding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Natural RNA circles function as efficient microRNA sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Comparison of circular RNA prediction tools.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

GENCODE: the reference human genome annotation for The ENCODE Project

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

An introduction to small non-coding RNAs: miRNA and snoRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

An Insight into Extreme Learning Machines: Random Neurons, Random Features and Kernels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Extreme learning machine for regression and multiclass classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Analysis of the preferences for splice codes across tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Extracting features from protein sequences to improve deep extreme learning machine for protein fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Circular RNAs are abundant, conserved, and associated with ALU repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Long non-coding RNA profiling links subgroup classification of endometrioid endometrial carcinomas with trithorax and polycomb complex aberrations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Simultaneous inhibition of multiple oncogenic miRNAs by a multi-potent microRNA sponge

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Evolutionary history of 7SL RNA-derived SINEs in Supraprimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The regulation of ornithine decarboxylase gene expression by sucrose and small upstream open reading frame in tomato (Lycopersicon esculentum Mill).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Dynamic interactions between transposable elements and their hosts

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Classification of G-protein coupled receptors based on support vector machine with maximum relevance minimum redundancy and genetic algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Molecular mechanisms of long noncoding RNAs on gastric cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Short intronic repeat sequences facilitate circular RNA production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Analysis and prediction of drug-drug interaction by minimum redundancy maximum relevance and incremental feature selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Long noncoding RNAs in spermatogenesis: insights from recent high-throughput transcriptome studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

GraphProt: modeling binding preferences of RNA-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Removal of a 67-base-pair sequence in the noncoding region of protooncogene fos converts it to a transforming gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The support vector machine under test

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

A Feature and Algorithm Selection Method for Improving the Prediction of Protein Structural Class.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The emerging landscape of circular RNA ciRS-7 in cancer (Review).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Reliable identification of genomic variants from RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Circular RNA: A new star of noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Using machine learning and high-throughput RNA sequencing to classify the precursors of small non-coding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Regulation of Tomato golden mosaic virus AL2 and AL3 gene expression by a conserved upstream open reading frame

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

DNA transposon-based gene vehicles - scenes from an evolutionary drive

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

RNAshapes: an integrated RNA analysis package based on abstract shapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Specific roles of 5' RNA secondary structures in stabilizing transcripts in chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Long noncoding RNA in liver diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Extreme Learning Machine for Multilayer Perceptron

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Genome-wide analysis of long noncoding RNA turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Circular RNAs are depleted of polymorphisms at microRNA binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Alu sequences are processed 7SL RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Analysis and Prediction of Myristoylation Sites Using the mRMR Method, the IFS Method and an Extreme Learning Machine Algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Non-coding mechanisms of local mRNA translation in neuronal dendrites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

RNA binding properties of the AU-rich element-binding recombinant Nup475/TIS11/tristetraprolin protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Chemistry in human telomere biology: structure, function and targeting of telomere DNA/RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Structure, function and targeting of human telomere RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Structure Prediction: New Insights into Decrypting Long Noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Non-coding RNAs: An Introduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Long noncoding RNA turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

A comprehensive overview and evaluation of circular RNA detection tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Gene selection algorithm by combining reliefF and mRMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

The ways of action of long non-coding RNAs in cytoplasm and nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Classifying ten types of major cancers based on reverse phase protein array profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00438-017-1372-7

Large-scale protein-protein interactions detection by integrating big biosensing data with computational model

21 January 2018

1 reference

12 December 2020

Analysis and Identification of Aptamer-Compound Interactions with a Maximum Relevance Minimum Redundancy and Nearest Neighbor Algorithm.

1 reference

12 December 2020

Sequence-Based Prediction of RNA-Binding Proteins Using Random Forest with Minimum Redundancy Maximum Relevance Feature Selection

1 reference

12 December 2020

RNA-binding proteins and RNA metabolism: a new scenario in the pathogenesis of Amyotrophic lateral sclerosis

1 reference

12 December 2020

Protein sequence classification with improved extreme learning machine algorithms

1 reference

12 December 2020

[Splicing of nuclear messenger RNA precursors]

1 reference

12 December 2020

10.1007/S00438-017-1372-7

Identifiers

DOI

1 reference

11 January 2018

release_5mxwllfhk5c4jevrbrgv62qbym

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5mxwllfhk5c4jevrbrgv62qbym

24 November 2022

mapped directly with Wikidata item

1 reference

11 January 2018