Detection of bacterial DNA in lymph nodes of Crohn's disease patients using high throughput sequencing. (Q39271503)

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5 March 2020

title

Detection of bacterial DNA in lymph nodes of Crohn's disease patients using high throughput sequencing (English)

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5 March 2020

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high-throughput sequencing

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5 March 2020

Paul Pavli

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5 March 2020

David M Gordon

series ordinal

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5 March 2020

Gwen E Allison

series ordinal

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5 March 2020

language of work or name

English

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publication date

15 January 2014

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5 March 2020

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volume

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issue

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page(s)

1596-1606

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Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum

5 March 2020

cites work

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High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn’s disease

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Nod1 and Nod2 regulation of inflammation in the Salmonella colitis model

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Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

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Prevalence of Campylobacter species in adult Crohn's disease and the preferential colonization sites of Campylobacter species in the human intestine

21 January 2018

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Detection of Helicobacteraceae in intestinal biopsies of children with Crohn's disease

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Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray

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Inflammatory bowel disease associated with Yersinia enterocolitica O:3 infection

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Pathogenic Yersinia DNA is detected in bowel and mesenteric lymph nodes from patients with Crohn's disease

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Development of the human infant intestinal microbiota

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Pyrosequencing-based analysis of the mucosal microbiota in healthy individuals reveals ubiquitous bacterial groups and micro-heterogeneity

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High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

21 January 2018

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Bacterial [correction of baterial] translocation in humans

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Bacterial translocation in patients with Crohn's disease undergoing surgery

21 January 2018

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Microbiology of bacterial translocation in humans

21 January 2018

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Interactions between the microbiota and the immune system

21 January 2018

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Extraintestinal dissemination of Salmonella by CD18-expressing phagocytes.

21 January 2018

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NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation

21 January 2018

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Defects in autophagy favour adherent-invasive Escherichia coli persistence within macrophages leading to increased pro-inflammatory response

21 January 2018

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

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Removing noise from pyrosequenced amplicons

21 January 2018

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UCHIME improves sensitivity and speed of chimera detection

21 January 2018

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Statistical methods for detecting differentially abundant features in clinical metagenomic samples

21 January 2018

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Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities

21 January 2018

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Assessing gut microbial diversity from feces and rectal mucosa

21 January 2018

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Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

21 January 2018

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Adherent invasive Escherichia coli strains from patients with Crohn's disease survive and replicate within macrophages without inducing host cell death

21 January 2018

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Adherent-invasive Escherichia coli isolated from Crohn's disease patients induce granulomas in vitro

21 January 2018

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Crohn disease--associated adherent-invasive E. coli bacteria target mouse and human Peyer's patches via long polar fimbriae

21 January 2018

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Adherent-invasive Escherichia coli blocks interferon-γ-induced signal transducer and activator of transcription (STAT)-1 in human intestinal epithelial cells

21 January 2018

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PCR detection of Mycobacterium paratuberculosis in Crohn's disease granulomas isolated by laser capture microdissection

21 January 2018

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Patchy distribution of mucosal lesions in ileal Crohn's disease is not linked to differences in the dominant mucosa-associated bacteria: a study using fluorescence in situ hybridization and temporal temperature gradient gel electrophoresis

21 January 2018

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The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients

21 January 2018

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Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease.

21 January 2018

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Molecular analysis of the gut microbiota of identical twins with Crohn's disease

21 January 2018

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Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach

21 January 2018

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21 January 2018

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10.1136/GUTJNL-2013-305320

21 January 2018

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24429583%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24429583%20AND%20SRC:MED&resulttype=core&format=json