The impact of RNA secondary structure on read start locations on the Illumina sequencing platform (Q36292756)

13 August 2017

The impact of RNA secondary structure on read start locations on the Illumina sequencing platform (English)

1 reference

13 August 2017

Cynthia Gibas

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Adam Price

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13 August 2017

Jaishree Garhyan

series ordinal

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13 August 2017

language of work or name

English

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publication date

28 February 2017

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13 August 2017

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13 August 2017

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13 August 2017

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13 August 2017

e0173023

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Creative Commons Attribution 4.0 International

13 August 2017

start time

28 February 2017

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April 2022 Public Data File from Crossref

copyrighted

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cites work

Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing

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Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing

30 September 2017

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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

30 September 2017

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Fast gapped-read alignment with Bowtie 2

30 September 2017

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

30 September 2017

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30 September 2017

ViennaRNA Package 2.0

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Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

30 September 2017

1 reference

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Sequencing bias: comparison of different protocols of microRNA library construction

30 September 2017

1 reference

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Genome-wide measurement of RNA secondary structure in yeast

30 September 2017

1 reference

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FRT-seq: amplification-free, strand-specific transcriptome sequencing

30 September 2017

1 reference

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Single molecule measurement of the "speed limit" of DNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

The Sequence Alignment/Map format and SAMtools

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

A structural interpretation of the effect of GC-content on efficiency of RNA interference

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

Viral RNA pseudoknots: versatile motifs in gene expression and replication

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

Mfold web server for nucleic acid folding and hybridization prediction

30 September 2017

1 reference

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Local and global factors affecting RNA sequencing analysis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

Effect of RNA secondary structure on RNA cleavage catalyzed by HIV-1 reverse transcriptase

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

Influence of template primary and secondary structure on the rate and fidelity of DNA synthesis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5330537

10.1371/JOURNAL.PONE.0173023

29 June 2018

Identifiers

DOI

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

28245230

1 reference