Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5. (Q35651278)

9 August 2017

title

Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5. (English)

1 reference

9 August 2017

0 references

1 reference

Joshua A Baller

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9 August 2017

Jiquan Gao

series ordinal

1 reference

9 August 2017

Daniel F Voytas

series ordinal

1 reference

9 August 2017

language of work or name

English

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publication date

25 July 2011

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Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

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inferred from page(s)

published in

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9 August 2017

volume

108

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9 August 2017

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9 August 2017

page(s)

20351-20356

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Calling Cards enable multiplexed identification of the genomic targets of DNA-binding proteins

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Regularization Paths for Generalized Linear Models via Coordinate Descent

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

The dual role of autonomously replicating sequences as origins of replication and as silencers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Distinct differences in chromatin structure at subtelomeric X and Y' elements in budding yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

A high-resolution atlas of nucleosome occupancy in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Calling cards for DNA-binding proteins.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Selection of target sites for mobile DNA integration in the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Retroviral DNA integration: HIV and the role of LEDGF/p75.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

A role for LEDGF/p75 in targeting HIV DNA integration

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Genome-wide map of nucleosome acetylation and methylation in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Targeting survival: integration site selection by retroviruses and LTR-retrotransposons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

27 July 2018

Integration by design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Controlling integration specificity of a yeast retrotransposon

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

HIV-1 integrase forms stable tetramers and associates with LEDGF/p75 protein in human cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Silent chromatin determines target preference of the Saccharomyces retrotransposon Ty5.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Genetic and physical maps of Saccharomyces cerevisiae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

The Saccharomyces retrotransposon Ty5 influences the organization of chromosome ends

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

The structure and evolution of subtelomeric Y' repeats in Saccharomyces cerevisiae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Ty3 integrates within the region of RNA polymerase III transcription initiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251128

Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators.

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103665108

Determinants that specify the integration pattern of retrotransposon Tf1 in the fbp1 promoter of Schizosaccharomyces pombe

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103665108

Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103665108

The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103665108

Tagging chromatin with retrotransposons: target specificity of the Saccharomyces Ty5 retrotransposon changes with the chromosomal localization of Sir3p and Sir4p

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103665108

Yeast retrotransposons: finding a nice quiet neighborhood

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21788500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21788500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1103665108

1 reference

9 August 2017

0 references

1 reference

9 August 2017

1 reference