The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans (Q34353891)

1 August 2017

title

The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans (English)

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1 August 2017

Harry R Beller

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1 August 2017

Patrick S G Chain

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1 August 2017

Tracy E Letain

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1 August 2017

Anu Chakicherla

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1 August 2017

Frank W Larimer

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1 August 2017

Paul M Richardson

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1 August 2017

Matthew A Coleman

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1 August 2017

Ann P Wood

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1 August 2017

Donovan P Kelly

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1 August 2017

language of work or name

English

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publication date

1 February 2006

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1 August 2017

language of work

Journal of Bacteriology

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1 August 2017

volume

188

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1 August 2017

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1 August 2017

page(s)

1473-1488

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Anaerobic, nitrate-dependent oxidation of U(IV) oxide minerals by the chemolithoautotrophic bacterium Thiobacillus denitrificans

1 August 2017

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Sulfide dehydrogenase activity of the monomeric flavoprotein SoxF of Paracoccus pantotrophus

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli

6 July 2018

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6 July 2018

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Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment.

6 July 2018

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Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

6 July 2018

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6 July 2018

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The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

6 July 2018

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Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution

6 July 2018

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6 July 2018

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Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.

6 July 2018

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Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism?

6 July 2018

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The ABC of ABCS: a phylogenetic and functional classification of ABC systems in living organisms

6 July 2018

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

6 July 2018

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6 July 2018

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6 July 2018

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"ADP sulfurylase" from Thiobacillus denitrificans is an adenylylsulfate:phosphate adenylyltransferase and belongs to a new family of nucleotidyltransferases

6 July 2018

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6 July 2018

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Transcription factor GCN4 for control of amino acid biosynthesis also regulates the expression of the gene for lipoamide dehydrogenase

6 July 2018

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Multiple sequence alignment with Clustal X

6 July 2018

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Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur

6 July 2018

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6 July 2018

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Base-calling of automated sequencer traces using phred. II. Error probabilities

6 July 2018

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

6 July 2018

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Unusual organization of the genes coding for HydSL, the stable [NiFe]hydrogenase in the photosynthetic bacterium Thiocapsa roseopersicina BBS.

6 July 2018

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Cell biology and molecular basis of denitrification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

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Characterization of Thiobacillus thioparus LV43 and its distribution in a chemoautotrophically based groundwater ecosystem

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Compositional biases of bacterial genomes and evolutionary implications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Oxidative metabolism of inorganic sulfur compounds by bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Characterization of the membranous denitrification enzymes nitrite reductase (cytochrome cd1) and copper-containing nitrous oxide reductase from Thiobacillus denitrificans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Deduced amino acid sequence, functional expression, and unique enzymatic properties of the form I and form II ribulose bisphosphate carboxylase/oxygenase from the chemoautotrophic bacterium Thiobacillus denitrificans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Identification and sequence analysis of the soxB gene essential for sulfur oxidation of Paracoccus denitrificans GB17.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Sequence analysis of subunits of the membrane-bound nitrate reductase from a denitrifying bacterium: the integral membrane subunit provides a prototype for the dihaem electron-carrying arm of a redox loop

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Biochemistry of the chemolithotrophic oxidation of inorganic sulphur

6 July 2018

1 reference

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Comparative ultrastructure of the thiobacilli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Thiobacillus denitrificans as an obligate chemolithotroph. Isolation and growth studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Assimilation and Toxicity of Some Exogenous C1 Compounds, Alcohols, Sugars and Acetate in the Methane-oxidizing Bacterium Methylococcus capsulatus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Two forms of ribulose-1,5-bisphosphate carboxylase/oxygenase from Thiobacillus denitrificans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Purification of Thiobacillus denitrificans siroheme sulfite reductase and investigation of some molecular and catalytic properties

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Specialist phototrophs, lithotrophs, and methylotrophs: a unity among a diversity of procaryotes?

6 July 2018

1 reference

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Anaerobic, nitrate-dependent microbial oxidation of ferrous iron.

6 July 2018

1 reference

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Biochemical characterization of phosphoryl transfer involving HPr of the phosphoenolpyruvate-dependent phosphotransferase system in Treponema denticola, an organism that lacks PTS permeases

27 October 2018

1 reference

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Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens.

27 October 2018

1 reference

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Organization of carboxysome genes in the thiobacilli

27 October 2018

1 reference

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The cytochrome complex SoxXA of Paracoccus pantotrophus is produced in Escherichia coli and functional in the reconstituted sulfur-oxidizing enzyme system.

27 October 2018

1 reference

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CueO is a multi-copper oxidase that confers copper tolerance in Escherichia coli.

27 October 2018

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Phylogeny and distribution of the soxB gene among thiosulfate-oxidizing bacteria

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellus).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Confirmation of Thiobacillus denitrificans as a species of the genus Thiobacillus, in the beta-subclass of the Proteobacteria, with strain NCIMB 9548 as the type strain

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Sulfur oxidation in rice field soil: activity, enumeration, isolation and characterization of thiosulfate-oxidizing bacteria

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

The novel genes, cbbQ and cbbO, located downstream from the RubisCO genes of Pseudomonas hydrogenothermophila, affect the conformational states and activity of RubisCO.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367237

Sulfur oxidation in Paracoccus pantotrophus: interaction of the sulfur-binding protein SoxYZ with the dimanganese SoxB protein

27 October 2018

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12 December 2020

The Tricarboxylic Acid Cycle in Thiobacillus denitrificans and Thiobacillus-A2

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12 December 2020

Genes involved in hydrogen and sulfur metabolism in phototrophic sulfur bacteria

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12 December 2020

Adenylylsulfate reductases from archaea and bacteria are 1:1 alphabeta-heterodimeric iron-sulfur flavoenzymes--high similarity of molecular properties emphasizes their central role in sulfur metabolism

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12 December 2020

Thiobacillus denitrificans as an obligate chemolithotroph. II. Cell suspension and enzymic studies.

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12 December 2020

Characterization of a new type of sulfite dehydrogenase from Paracoccus pantotrophus GB17

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12 December 2020

The incorporation of acetate by the chemoautotroph Thiobacillus neapolitanus strain C

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12 December 2020

Studies on adenosine-5′-phosphosulphate reductase from Thiobacillus denitrificans

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12 December 2020

10.1128/JB.188.4.1473-1488.2006

Identifiers

DOI

1 reference

1 August 2017

1 reference

1 August 2017

1 reference