Folding Network of Villin Headpiece Subdomain (Q34307044)

1 August 2017

title

Folding network of villin headpiece subdomain (English)

1 reference

1 August 2017

Folding Network of Villin Headpiece Subdomain (English)

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.BPJ.2010.08.081

27 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

27 August 2024

Hongxing Lei

1 reference

1 August 2017

Yao Su

series ordinal

1 reference

1 August 2017

Lian Jin

series ordinal

1 reference

1 August 2017

Yong Duan

series ordinal

1 reference

1 August 2017

language of work or name

English

0 references

publication date

1 November 2010

1 reference

1 August 2017

17 November 2010

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21081086

27 August 2024

number of pages

1 reference

full work available at URL

inferred from page(s)

http://www.cell.com/article/S0006349510012117/pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21081086/?tool=EBI

27 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21081086/pdf/?tool=EBI

27 August 2024

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

https://europepmc.org/articles/PMC2980750

27 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

https://europepmc.org/articles/PMC2980750?pdf=render

27 August 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

https://doi.org/10.1016/j.bpj.2010.08.081

27 August 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21081086

https://api.elsevier.com/content/article/PII:S0006349510012117?httpAccept=text/xml

27 August 2024

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.BPJ.2010.08.081

https://api.elsevier.com/content/article/PII:S0006349510012117?httpAccept=text/plain

27 August 2024

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.BPJ.2010.08.081

27 August 2024

1 reference

1 August 2017

1 reference

1 August 2017

1 reference

1 August 2017

page(s)

3374-3384

1 reference

Going beyond clustering in MD trajectory analysis: an application to villin headpiece folding

1 August 2017

cites work

1 reference

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Folding simulations of a de novo designed protein with a betaalphabeta fold

6 July 2018

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An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

6 July 2018

1 reference

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Detection of a transient intermediate in a rapid protein folding process by solid-state nuclear magnetic resonance

6 July 2018

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Dual folding pathways of an alpha/beta protein from all-atom ab initio folding simulations

6 July 2018

1 reference

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Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis.

6 July 2018

1 reference

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Folding energy landscape and network dynamics of small globular proteins

6 July 2018

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Chemical, physical, and theoretical kinetics of an ultrafast folding protein

6 July 2018

1 reference

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Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain

6 July 2018

1 reference

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Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data

6 July 2018

1 reference

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Two-stage folding of HP-35 from ab initio simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Network and graph analyses of folding free energy surfaces

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

The Amber biomolecular simulation programs

6 July 2018

1 reference

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Finding pathways between distant local minima

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Uncovering the overlapping community structure of complex networks in nature and society

6 July 2018

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High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Study of the Villin headpiece folding dynamics by combining coarse-grained Monte Carlo evolution and all-atom molecular dynamics.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Hidden complexity of free energy surfaces for peptide (protein) folding

6 July 2018

1 reference

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Exploring protein native states and large-scale conformational changes with a modified generalized born model

6 July 2018

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A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

6 July 2018

1 reference

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Experimental tests of villin subdomain folding simulations

6 July 2018

1 reference

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Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing

6 July 2018

1 reference

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Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing

6 July 2018

1 reference

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Native-like mean structure in the unfolded ensemble of small proteins

6 July 2018

1 reference

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

6 July 2018

1 reference

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The early stage of folding of villin headpiece subdomain observed in a 200-nanosecond fully solvated molecular dynamics simulation

6 July 2018

1 reference

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Protein folding dynamics: the diffusion-collision model and experimental data

6 July 2018

1 reference

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

6 July 2018

1 reference

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Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications

6 July 2018

1 reference

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Dominant forces in protein folding

6 July 2018

1 reference

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6 July 2018

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28 October 2018

1 reference

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A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D.

28 October 2018

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28 October 2018

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Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations

28 October 2018

1 reference

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Ab initio folding of albumin binding domain from all-atom molecular dynamics simulation

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Folding of the villin headpiece subdomain from random structures. Analysis of the charge distribution as a function of pH.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2980750

Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces

28 October 2018

1 reference

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Kinetic analysis of molecular dynamics simulations reveals changes in the denatured state and switch of folding pathways upon single-point mutation of a beta-sheet miniprotein

28 October 2018

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12 December 2020

The protein folding network

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12 December 2020

Ab initio folding of helix bundle proteins using molecular dynamics simulations

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12 December 2020

All-atom fast protein folding simulations: the villin headpiece

1 reference

12 December 2020

Simulations of a small protein in a specifically designed generalized ensemble

1 reference

12 December 2020

Free-Energy Landscape of the Villin Headpiece in an All-Atom Force Field

1 reference

12 December 2020

Generalized-ensemble Monte Carlo method for systems with rough energy landscape

1 reference

https://api.crossref.org/works/10.1016/J.BPJ.2010.08.081

Molecular dynamics with coupling to an external bath

27 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.BPJ.2010.08.081

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

27 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.BPJ.2010.08.081

27 August 2024

Identifiers

1 reference

1 August 2017

1 reference

1 August 2017

1 reference