Complex Evolutionary History of the Mammalian Histone H1.1-H1.5 Gene Family (Q33590771)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

title

Complex Evolutionary History of the Mammalian Histone H1.1-H1.5 Gene Family (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

Devani Romero

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

Pedro Suau

series ordinal

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9 April 2020

publication date

1 March 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

Molecular Biology and Evolution

9 April 2020

published in

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9 April 2020

volume

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9 April 2020

issue

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

page(s)

545-558

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

Chromatin structure-dependent conformations of the H1 CTD.

9 April 2020

cites work

1 reference

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21 June 2018

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Photobleaching studies reveal that a single amino acid polymorphism is responsible for the differential binding affinities of linker histone subtypes H1.1 and H1.5.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Role of H1 linker histones in mammalian development and stem cell differentiation.

21 June 2018

1 reference

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Interphase H1 phosphorylation: Regulation and functions in chromatin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Specificities and genomic distribution of somatic mammalian histone H1 subtypes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

The role of linker histone H1 modifications in the regulation of gene expression and chromatin dynamics

21 June 2018

1 reference

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Linker histone partial phosphorylation: effects on secondary structure and chromatin condensation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Gene-wide identification of episodic selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

The I-TASSER Suite: protein structure and function prediction.

21 June 2018

1 reference

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Identification of novel post-translational modifications in linker histones from chicken erythrocytes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Increased substitution rates surrounding low-complexity regions within primate proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Evolution of protein indels in plants, animals and fungi.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

The genomic landscape of the somatic linker histone subtypes H1.1 to H1.5 in human cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Dissecting the role of low-complexity regions in the evolution of vertebrate proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

A unified phylogeny-based nomenclature for histone variants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Protein kinase A-mediated serine 35 phosphorylation dissociates histone H1.4 from mitotic chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

21 June 2018

Evolution and disorder

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Scanning for the signatures of positive selection for human-specific insertions and deletions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Histone H1 subtypes differentially modulate chromatin condensation without preventing ATP-dependent remodeling by SWI/SNF or NURF.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Chromatin condensing functions of the linker histone C-terminal domain are mediated by specific amino acid composition and intrinsic protein disorder

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Histone H1 and its isoforms: contribution to chromatin structure and function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Phosphorylation of the carboxy-terminal domain of histone H1: effects on secondary structure and DNA condensation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

jModelTest: phylogenetic model averaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Differential affinity of mammalian histone H1 somatic subtypes for DNA and chromatin.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

PAML 4: phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Phosphorylation of the linker histone H1 by CDK regulates its binding to HP1alpha

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Histone H1 phosphorylation occurs site-specifically during interphase and mitosis: identification of a novel phosphorylation site on histone H1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Concerted and birth-and-death evolution of multigene families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

HP1 binds specifically to Lys26-methylated histone H1.4, whereas simultaneous Ser27 phosphorylation blocks HP1 binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

DNA-induced secondary structure of the carboxyl-terminal domain of histone H1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

H1 family histones in the nucleus. Control of binding and localization by the C-terminal domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Not so different after all: a comparison of methods for detecting amino acid sites under selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

The preferential binding of histone H1 to DNA scaffold-associated regions is determined by its C-terminal domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Prospects for inferring very large phylogenies by using the neighbor-joining method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

An inducible helix-Gly-Gly-helix motif in the N-terminal domain of histone H1e: a CD and NMR study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Induction of secondary structure in a COOH-terminal peptide of histone H1 by interaction with the DNA: an infrared spectroscopy study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Origin of H1 linker histones

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

NPS@: network protein sequence analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Histone H1: location and role

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Improved performance in protein secondary structure prediction by inhomogeneous score combination.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

The mouse histone H1 genes: gene organization and differential regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Human histone gene organization: nonregular arrangement within a large cluster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Characterization of the H1.5 gene completes the set of human H1 subtype genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

PHD: predicting one-dimensional protein structure by profile-based neural networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Identification of two DNA-binding sites on the globular domain of histone H5.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

SOPM: a self-optimized method for protein secondary structure prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

A proposal for a coherent mammalian histone H1 nomenclature correlated with amino acid sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Linker histones H1 and H5 prevent the mobility of positioned nucleosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Cryptic simplicity in DNA is a major source of genetic variation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Protein motifs that recognize structural features of DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5400378

Model-based prediction of sequence alignment quality

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins

21 January 2018

1 reference

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Isolation of two murine H1 histone genes and chromosomal mapping of the H1 gene complement

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

M phase-specific phosphorylation of histone H1.5 at threonine 10 by GSK-3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

Isoform-specific phosphorylation of human linker histone H1.4 in mitosis by the kinase Aurora B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

Highly preferential nucleation of histone H1 assembly on scaffold-associated regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

GARD: a genetic algorithm for recombination detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

Evolution of the vertebrate H1 histone class: evidence for the functional differentiation of the subtypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

Sequence complexity of histone H1 subtypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

DNA-induced alpha-helical structure in the NH2-terminal domain of histone H1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

Analysis of the charge distribution in the C-terminal region of histone H1 as related to its interaction with DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW241

The histone H1 complements of dividing and nondividing cells of the mouse

21 January 2018

1 reference

12 December 2020

Sequence conservation in the N-terminal domain of histone H1

1 reference

12 December 2020

ADAPTSITE: detecting natural selection at single amino acid sites

1 reference

12 December 2020

Studies on the role and mode of operation of the very-lysine-rich histone H1 in eukaryote chromatin. The three structural regions of the histone H1 molecule

1 reference

12 December 2020

Birth-and-death evolution with strong purifying selection in the histone H1 multigene family and the origin of orphon H1 genes

1 reference

12 December 2020

Identification of specific functional subdomains within the linker histone H10 C-terminal domain

1 reference

12 December 2020

Identifiers

DOI

10.1093/MOLBEV/MSW241

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

PubMed publication ID

28100789

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28100789%20AND%20SRC:MED&resulttype=core&format=json