New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras (Q33256604)

24 July 2017

title

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras (English)

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24 July 2017

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Nadia A Chuzhanova

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Andrew J Weightman

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Antonia J Jones

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24 July 2017

Kevin E Ashelford

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John C Fry

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24 July 2017

language of work or name

English

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publication date

1 September 2006

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Applied and Environmental Microbiology

24 July 2017

published in

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24 July 2017

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24 July 2017

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24 July 2017

page(s)

5734-5741

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Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments

24 July 2017

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21 June 2018

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At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

21 June 2018

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21 June 2018

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Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host

21 June 2018

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Phylogenetic characterization of a polychlorinated-dioxin- dechlorinating microbial community by use of microcosm studies

21 June 2018

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Obesity alters gut microbial ecology

21 June 2018

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Microbes on the human vaginal epithelium

21 June 2018

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Geobiology of a microbial endolithic community in the Yellowstone geothermal environment

21 June 2018

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Comparative metagenomics of microbial communities

21 June 2018

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Diversity of the human intestinal microbial flora

21 June 2018

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The effect of protozoa on the composition of rumen bacteria in cattle using 16S rRNA gene clone libraries

21 June 2018

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Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem

21 June 2018

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21 June 2018

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Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

21 June 2018

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The Uncultured Microbial Majority

21 June 2018

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The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

21 June 2018

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Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments.

21 June 2018

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21 June 2018

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21 June 2018

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Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes.

21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms.

21 June 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

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Hybrid DNA artifact from PCR of closely related target sequences.

21 June 2018

1 reference

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DNA damage promotes jumping between templates during enzymatic amplification

21 June 2018

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Intracolony variation of bacterial gut microbiota among castes and ages in the fungus-growing termite Macrotermes gilvus.

21 June 2018

1 reference

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Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563593

The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16957188

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Synchrony and seasonality in bacterioplankton communities of two temperate rivers

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1128/AEM.00556-06

Identifiers

DOI

10.1128/AEM.00556-06

1 reference

24 July 2017

1 reference

24 July 2017

1 reference