The architecture of the spliceosomal U4/U6.U5 tri-snRNP. (Q27316447)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26106855%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

title

The architecture of the spliceosomal U4/U6.U5 tri-snRNP (English)

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18 February 2020

0 references

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18 February 2020

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18 February 2020

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18 February 2020

author name string

Thi Hoang Duong Nguyen

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18 February 2020

Christos G Savva

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18 February 2020

Andrew J Newman

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18 February 2020

Kiyoshi Nagai

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18 February 2020

language of work or name

English

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publication date

24 June 2015

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18 February 2020

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18 February 2020

volume

523

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18 February 2020

issue

7558

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18 February 2020

page(s)

47-52

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Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA

18 February 2020

cites work

1 reference

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Elongation factor G bound to the ribosome in an intermediate state of translocation

21 March 2017

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Structural Basis of Brr2-Prp8 Interactions and Implications for U5 snRNP Biogenesis and the Spliceosome Active Site

21 March 2017

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Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8

21 March 2017

1 reference

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Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

21 March 2017

1 reference

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Crystal structure of Prp8 reveals active site cavity of the spliceosome

21 March 2017

1 reference

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Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis

21 March 2017

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The Effect of Asp-His-Ser/Thr-Trp Tetrad on the Thermostability of WD40-Repeat Proteins

21 March 2017

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Crystal Structure of a Self-Spliced Group II Intron

21 March 2017

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I-TASSER server for protein 3D structure prediction

21 March 2017

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Analysis of pre-mRNA and pre-rRNA processing factor Snu13p structure and mutants

21 March 2017

1 reference

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Structural basis for DNA duplex separation by a superfamily-2 helicase

21 March 2017

1 reference

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Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP

21 March 2017

1 reference

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Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

21 March 2017

1 reference

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RNA structural requirements for the association of the spliceosomal hPrp31 protein with the U4 and U4atac small nuclear ribonucleoproteins

21 March 2017

1 reference

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The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP

21 March 2017

1 reference

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Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase

21 March 2017

1 reference

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Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The human homologue of the yeast splicing factor prp6p contains multiple TPR elements and is stably associated with the U5 snRNP via protein-protein interactions

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Identification, characterization and crystal structure analysis of the human spliceosomal U5 snRNP-specific 15 kD protein

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2.

21 March 2017

1 reference

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Features and development of Coot

21 March 2017

1 reference

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EMAN2: an extensible image processing suite for electron microscopy

21 March 2017

1 reference

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Accurate determination of local defocus and specimen tilt in electron microscopy

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7

21 March 2017

1 reference

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Localization of Prp8, Brr2, Snu114 and U4/U6 proteins in the yeast tri-snRNP by electron microscopy

21 March 2017

1 reference

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prp8 mutations that cause human retinitis pigmentosa lead to a U5 snRNP maturation defect in yeast

21 March 2017

1 reference

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Evidence for a role of Sky1p-mediated phosphorylation in 3' splice site recognition involving both Prp8 and Prp17/Slu4.

21 March 2017

1 reference

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Extensive genetic interactions between PRP8 and PRP17/CDC40, two yeast genes involved in pre-mRNA splicing and cell cycle progression

21 March 2017

1 reference

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Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

21 March 2017

1 reference

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Protein-RNA interactions in the U5 snRNP of Saccharomyces cerevisiae

21 March 2017

1 reference

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RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2

21 March 2017

1 reference

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Alternative 3'-end processing of U5 snRNA by RNase III.

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The biochemical defects of prp4-1 and prp6-1 yeast splicing mutants reveal that the PRP6 protein is required for the accumulation of the [U4/U6.U5] tri-snRNP.

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Spliceosome Structure and Function

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Prevention of overfitting in cryo-EM structure determination

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Visualizing density maps with UCSF Chimera

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Conformational changes of elongation factor G on the ribosome during tRNA translocation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

How cryo-EM is revolutionizing structural biology

28 September 2017

1 reference

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Evidence for a group II intron-like catalytic triplex in the spliceosome

28 September 2017

1 reference

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RNA catalyses nuclear pre-mRNA splicing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

A Bayesian view on cryo-EM structure determination.

28 September 2017

1 reference

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ModeRNA server: an online tool for modeling RNA 3D structures

28 September 2017

1 reference

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The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome

28 September 2017

1 reference

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Physical and genetic interactions of yeast Cwc21p, an ortholog of human SRm300/SRRM2, suggest a role at the catalytic center of the spliceosome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Image processing for electron microscopy single-particle analysis using XMIPP.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Organization of core spliceosomal components U5 snRNA loop I and U4/U6 Di-snRNP within U4/U6.U5 Tri-snRNP as revealed by electron cryomicroscopy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The EF-G-like GTPase Snu114p regulates spliceosome dynamics mediated by Brr2p, a DExD/H box ATPase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Suppressors of a cold-sensitive mutation in yeast U4 RNA define five domains in the splicing factor Prp8 that influence spliceosome activation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Allele-specific genetic interactions between Prp8 and RNA active site residues suggest a function for Prp8 at the catalytic core of the spliceosome.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Functional and structural characterization of the prp3 binding domain of the yeast prp4 splicing factor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Mutagenesis of the yeast gene PRP8 reveals domains governing the specificity and fidelity of 3' splice site selection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Beam-induced motion correction for sub-megadalton cryo-EM particles.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Quantifying the local resolution of cryo-EM density maps

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

PRIME: probabilistic initial 3D model generation for single-particle cryo-electron microscopy

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Structural bioinformatics of the human spliceosomal proteome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Dissection of Prp8 protein defines multiple interactions with crucial RNA sequences in the catalytic core of the spliceosome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

A spontaneous duplication in U6 spliceosomal RNA uncouples the early and late functions of the ACAGA element in vivo.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Experimental observation of the improvement in MTF from backthinning a CMOS direct electron detector

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The Prp19-associated complex is required for specifying interactions of U5 and U6 with pre-mRNA during spliceosome activation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Suppression of multiple substrate mutations by spliceosomal prp8 alleles suggests functional correlations with ribosomal ambiguity mutants

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

Mutagenesis Suggests Several Roles of Snu114p in Pre-mRNA Splicing

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4536768

The U5 and U6 small nuclear RNAs as active site components of the spliceosome

28 November 2018

1 reference

PubMed

12 December 2020

Splicing factor Prp8 governs U4/U6 RNA unwinding during activation of the spliceosome

1 reference

PubMed

12 December 2020

U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites

1 reference

PubMed

12 December 2020

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE14548

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26106855%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

18 February 2020

1040399474

0 references

OpenCitations bibliographic resource ID

2417921

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2417921

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26106855%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

PubMed publication ID

26106855

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26106855%20AND%20SRC:MED&resulttype=core&format=json