Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta (Q21183992)

16 August 2022

Chad Nusbaum

Chad

Nusbaum

1 reference

16 August 2022

Gerard Manning

Gerard

Manning

1 reference

16 August 2022

Carsten Russ

Carsten

Russ

1 reference

16 August 2022

B Franz

Lang

B Franz Lang

1 reference

16 August 2022

Hugh M

Robertson

Hugh M Robertson

1 reference

16 August 2022

Stephen R Fairclough

Stephen R

Fairclough

1 reference

16 August 2022

Zehua Chen

Zehua

Chen

1 reference

16 August 2022

Eric Kramer

Eric

Kramer

1 reference

16 August 2022

Qiandong Zeng

Qiandong

Zeng

1 reference

16 August 2022

Sarah Young

Sarah

Young

1 reference

16 August 2022

Emina Begovic

Emina

Begovic

1 reference

16 August 2022

Daniel J Richter

Daniel J

Richter

1 reference

16 August 2022

M Jody Westbrook

M Jody

Westbrook

1 reference

16 August 2022

Brian Haas

Brian

Haas

1 reference

describes a project that uses

16 August 2022

language of work or name

English

0 references

publication date

2013

0 references

0 references

0 references

0 references

R15

0 references

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

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Comparative functional genomics of the fission yeasts

19 March 2017

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Resolving difficult phylogenetic questions: why more sequences are not enough

19 March 2017

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The Amphimedon queenslandica genome and the evolution of animal complexity

19 March 2017

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Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

19 March 2017

1 reference

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Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Molecular phylogeny of choanoflagellates, the sister group to Metazoa

19 March 2017

1 reference

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Multigene Phylogeny of Choanozoa and the Origin of Animals

19 March 2017

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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

19 March 2017

1 reference

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OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

19 March 2017

1 reference

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PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

19 March 2017

1 reference

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The protein kinase complement of the human genome

19 March 2017

1 reference

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BLAT—The BLAST-Like Alignment Tool

19 March 2017

1 reference

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A receptor tyrosine kinase from choanoflagellates: molecular insights into early animal evolution

19 March 2017

1 reference

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Gene ontology: tool for the unification of biology

19 March 2017

1 reference

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Genetic control of the cell-division cycle in yeast. I. Detection of mutants

19 March 2017

1 reference

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Broad phylogenomic sampling improves resolution of the animal tree of life

19 March 2017

1 reference

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Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Structural insight into filament formation by mammalian septins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

19 March 2017

1 reference

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The Pfam protein families database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Predicting coiled coils from protein sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The protein kinases of budding yeast: six score and more

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Septins: the fourth component of the cytoskeleton

19 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

19 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Phylogenomics revives traditional views on deep animal relationships

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The evolutionary origin of hedgehog proteins

19 March 2017

1 reference

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The sea urchin kinome: a first look

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Evolution of protein kinase signaling from yeast to man

19 March 2017

1 reference

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Eph receptors and ephrins: regulators of guidance and assembly

19 March 2017

1 reference

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Early animal evolution: emerging views from comparative biology and geology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Approaches to Fungal Genome Annotation

19 March 2017

1 reference

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Cell differentiation and morphogenesis in the colony-forming choanoflagellate Salpingoeca rosetta

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Early evolution of animal cell signaling and adhesion genes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The mouse kinome: discovery and comparative genomics of all mouse protein kinases

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The deep roots of eukaryotes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Origin of metazoan cadherin diversity and the antiquity of the classical cadherin/β-catenin complex

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Multicellular development in a choanoflagellate.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The protist, Monosiga brevicollis, has a tyrosine kinase signaling network more elaborate and diverse than found in any known metazoan

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Signaling properties of a non-metazoan Src kinase and the evolutionary history of Src negative regulation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Six major steps in animal evolution: are we derived sponge larvae?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

A phylogenomic investigation into the origin of metazoa.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Cadherins in development: cell adhesion, sorting, and tissue morphogenesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Functional development of Src tyrosine kinases during evolution from a unicellular ancestor to multicellular animals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The unicellular ancestry of animal development

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Gene co-option in physiological and morphological evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The C. elegans septin genes, unc-59 and unc-61, are required for normal postembryonic cytokineses and morphogenesis but have no essential function in embryogenesis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The protein kinases of Caenorhabditis elegans: a model for signal transduction in multicellular organisms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

Distinct roles of septins in cytokinesis: SEPT9 mediates midbody abscission

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

The origins of multicellularity: a multi-taxon genome initiative.

27 September 2017

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-2-R15

Architectures of biological complexity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-2-R15

Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-2-R15

Structure and expression of conserved Wnt pathway components in the demosponge Amphimedon queenslandica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-2-R15

The premetazoan ancestry of cadherins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-2-R15

Sponge genes provide new insight into the evolutionary origin of the neurogenic circuit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-2-R15

C. elegans ankyrin repeat protein VAB-19 is a component of epidermal attachment structures and is essential for epidermal morphogenesis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054682

29 November 2018

Identifiers

DOI

10.1186/GB-2013-14-2-R15

1 reference

release_7xndo6dd4va4lllwyo5n7uo3se

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7xndo6dd4va4lllwyo5n7uo3se

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

PubMed publication ID

23419129

1 reference