- Absalon, fili mi (Josquin des Prez), 4 vo. – The attribution to La Rue is the more fashionable
- Amicus fidelis, 2 vo. – Missing from New Grove
- Autant en emporte le vent, 4 vo.
- Ave Regina caelorum, 4 vo. – contrafact Ave apertor caelorum
- Considera Israel, 4 vo. – 2nda pars Doleo super te
- Credo L'amour du moi - Patrem omnipotentem, 4 vo. – Jena Choirbooks, D-Ju MS 8 (1512)
- Da pacem Domine, 4 vo.
- Delicta juventutis, 4 vo.
- Diligite inimicos vestros, 2 vo. – Missing from New Grove
- Filioli, si quis peccaverit, 2 vo. – Missing from New Grove
- Frange esurienti panem tuum, 2 vo. – Missing from New Grove
- Gaude Virgo, 4 vo.
- Incessament mon povre cueur lamente, 5 vo.
- Kyrie Paschale a 5, 5 vo. – Jena Choirbooks, D-Ju MS 4 (1513)
- Lauda anima mea Dominum, 4 vo. – Ps. CXLVI
- Laudate Dominum, omnes gentes, 4 vo.
- Lief, begheeft mij niet, 4 vo.
- Magnificat primi toni, 4–6 vo. – Jena Choirbooks, D-Ju MS 20 (ca. 1515)
- Magnificat secundi toni, 4 vo. – Jena Choirbooks, D-Ju MS 20 (ca. 1515)
- Magnificat quarti toni, 4 vo. – Another Mag. iv toni attrib. La Rue, Josquin, Brumel or Agricola
- Magnificat quinti toni, 4 vo. – Jena Choirbooks, D-Ju MS 20 (ca. 1515)
- Magnificat sexti toni, 5 vo. – Jena Choirbooks, D-Ju MS 20 (ca. 1515)
- Magnificat septimi toni, 4 vo. – Jena Choirbooks, D-Ju MS 20 (ca. 1515)
- Magnificat octavi toni, 4 vo.
- Maria mater gratiæ, 5 vo. – Missing from New Grove
- Miserere mei, 2 vo. – Missing from New Grove
- Missa Alleluia, 5 vo. – Jena Choirbooks, D-Ju MS 12 (1518)
- Missa Almana (Missa Pourquoy non), 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa Assumpta est Maria, 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa Ave Maria, 5 vo. – Jena Choirbooks, D-Ju MS 12 (1518)
- Missa Ave sanctissima Maria a 6, 6 vo. – Jena Choirbooks, D-Ju MS 4 (1513) and 5 (1515)
- Missa de Beata Virgine, 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa Conceptio tua, 5 vo. – Jena Choirbooks, D-Ju MS 5 (1515)
- Missa feria a 5, 5 vo. – Jena Choirbooks, D-Ju MS 5 (1515)
- Missa Incessament mon pauvre coeur, 5 vo. – Jena Choirbooks, D-Ju MS 5 (1515)
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- Missa Inviolata, 4 vo. – Jena Choirbooks, D-Ju MS 7 (1516)
- Missa L'homme armé I, 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa L'homme armé II, 4 vo. – Jena Choirbooks, D-Ju MS 2 (1515)
- Missa Ista est speciosa, 5 vo. – Jena Choirbooks, D-Ju MS 2 (1515)
- Missa Nunqua fue pena major, 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa O gloriosa Domina Margareta, 4 vo. – Jena Choirbooks, D-Ju MS 5 (1515)
- Missa pro defunctis, 5 vo.
- Missa Puer natus est nobis, 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa Resurrexit, 5 vo. – Or Missa pascale; Jena Choirbooks, D-Ju MS 5
- Missa Sancta Anna, 4 vo. – Jena Choirbooks, D-Ju MS 7 (1516)
- Missa Sancta Dei genetrix, 4 vo. – Jena Choirbooks, D-Ju MS 21 (1523)
- Missa Sancto Antonio, 4 vo. – Jena Choirbooks, D-Ju MS 22 (1500)
- Missa Sancto Job, 4 vo. – Jena Choirbooks, D-Ju MS 7 (1516)
- Missa Sancta cruce, 5 vo. – Jena Choirbooks, D-Ju MS 12 (1518)
- Missa Sine nomine I, 4 vo. – Jena Choirbooks, D-Ju MS 12 (1518)
- Missa Sine nomine II, 4 vo. – Jena Choirbooks, D-Ju MS 12 (1518)
- Missa Sub tuum praesidium, 4 vo. – In Misse Antonii de Févin etc. (Ottaviano Petrucci), 1515
- Missa Tandernaken, 4 vo.
- Missa Tous les regrets I, 4 vo. – Jena Choirbooks, D-Ju MS 12 (1518)
- Myn hert altyt heeft verlanghen, 4 vo.
- Ne temere quid loquaris, 2 vo. – Missing from New Grove
- Non salvatur Rex, 2 vo. – Missing from New Grove
- O domine Jesu Christe, 4 vo.
- O salutaris hostia, 4 vo. – See also Wir danken dir
- Pater de caelis deus, 6 vo. – Trinity
- Pourquoi non, 4 vo.
- Quis dabit pacem, 4 vo. – Text lost
- Regina caeli, 4 vo.
- Salve mater salvatoris, 4 vo.
- Salve Regina, 4 vo. – ? 1 of 6 (all dorian and a 4; I is canonic, IV alternatim)
- Sancta Maria virgo, 3 vo.
- Si dormiero, 3 vo. – Ascriptions to Isaac, Agricola and Finck
- Vexilla Regis - Passio Domini, 4 vo.
- Wir danken dir, o Gottes Lamm, 4 vo. – Contrafact of O Salutaris
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