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tubiana/README.md

Thibault Tubiana, PhD.

About me

I am currently a postdoctoral fellow the I2BC institute (Institute for Integrative Biology of the Cell) in the IMAPP Team. I work with moledular modelling and molecular dynamic simulation on viral proteins (Hepatitis E, Hepatitis C, Norovirus) and their interaction with biological membranes.

I was previously at the the University of Bergen in Nathalie Reuter's group working on the depiction of peripheral membrane protein membrane binding site.
I also worked at the Servier research institute (as a postdoctoral fellow) where I developed new methods to increase their bioisosteric molecular 3D fragment knowledge.

During my Ph.D., supervised by Dr. Stephane Bressanelli and Dr. Yves Boulard at the French Atomic Energy Commission (Paris Saclay), I studied the norovirus capsid self-assembly using molecular dynamics, homology modeling, protein/protein docking but also some experiments with S.A.X.S data acquisition and interpretation.

I love Structural bioinformatic, Molecular Modelling, Molecular Dynamics and 3D visualisation.

Github pages:

About my work

You can learn more about my work here:

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Github Stats

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  1. TTClust TTClust Public

    clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)

    Python 106 36

  2. protocolGromacs protocolGromacs Public

    Automatic gromacs protocol from preparation to production with ligand parametrization through

    Shell 59 14

  3. ttclustGUI ttclustGUI Public

    Graphical User Interface for TTclust

    Python 3 2

  4. model_analyser model_analyser Public

    R 1