A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

A Consensus Docking Plugin for PyMOL

A PyMOL plugin for visualizing vibrations in molecules and solids

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

calculate chemical bond strength in solids, surfaces and molecules

A collection of PyMOL plugins to visualize atomic bonds.

Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.

parKVFinder: thread-level parallel KVFinder

parKVFinder-win: thread-level parallel KVFinder for Windows

Docking viewer plug-in for PyMOL

A simple script to generate Ramachandran plot from Pymol.

Customized batch exhibition of three-dimensional molecules based on pymol framework

PDB plugin for PyMOL

PyMOL plugin to visualize interactions detected by the fingeRNAt program

Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles

MODE-TASK plugin for PyMOL

PyMOL extension to map a protein pocket, generated from PockDrug, to the full protein structure.