P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

Visualizations of macromolecular structures with UCSF ChimeraX

Map AlphaFold PAE values on a model

run commands when opening files

Docker image for the molecular visualization program, UCSF ChimeraX

An API to interactively run the UCSF ChimeraX molecular visualization software on the Lonestar6 supercomputer.

My configuration for UCSF ChimeraX

This bundle provides ChimeraX command for recognizing ligands in cryoEM and X-ray crystallography maps using deep learning.

Datasets available FREELY on the PUBLIC Internet. (punctuation)

This repository provides a demonstration of basic molecular docking using software tools such as AutoDock and ChimeraX. These techniques form part of the curriculum of the Bioinformatics practical course offered by Ahmedabad University, under the course code BIO205.

Relevant neurological proteins pulled directly from my personal ChimeraX library repo, found on my profile