Toolbox for molecular animations in Blender, powered by Geometry Nodes.

COBRApy is a package for constraint-based modeling of metabolic networks.

Python package to study microbial communities using metabolic modeling.

Analysis of non-covalent interactions in MD trajectories

Contact map analysis for biomolecules; based on MDTraj

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

A Python parser for the BRENDA database

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

A python package to analyse qPCR data for single-use or high-throughput application

AutoML system for building trustworthy peptide bioactivity predictors

genomics, biochemistry, biotechnology, cell biology, biophysics, ecology

Ligand-binding site classification with deep graph neural networks.

Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams

semi-supervised deep learning for classification of molecular structures

Use the parallelization framework jug to build exposons!

Python package and workflow for EFM calculation via (mp)lrs and efmtool

A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.

Bioinformatics (biochemistry) data processing scripts for NMR, and protein data analysis (PyMOL)

A script to run docking experiments in AutoDock Vina for several ligands at once with technical replicates.

Automatic pathway assembly with the YeastPathwayKit