mikessh

Follow

Mikhail Shugay mikessh

Follow

166 followers · 93 following

Achievements

Achievements

Highlights

Pro

Organizations

migmap Public

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

bioinformatics ngs sequencing immunology t-cell antibody t-cell-receptor

Groovy 52 20 Other Updated Oct 29, 2024
vdjtools Public

Post-analysis of immune repertoire sequencing data

bioinformatics stat immunology repertoire t-cell antibody t-cell-receptor

Groovy 131 40 Other Updated May 23, 2024
migec Public

A RepSeq processing swiss-knife

adapter bioinformatics ngs sequencing immunology antibody umi

Groovy 41 19 Other Updated Mar 29, 2024
homebrew-repseq Public

Immune repertoire sequencing data analysis packages for Linux/MacOS.

homebrew linuxbrew rep-seq

Ruby 2 Updated Nov 12, 2018
repseq-tutorial Public

Rep-Seq data analysis tutorial

HTML 11 7 Updated Dec 6, 2017
vdjtools-doc Public archive

THIS REPOSITORY IS DEPRECATED, FOR ISSUE TRACKER GO TO

Python 1 2 Updated Oct 13, 2017
repseq-snippets Public

Java 1 Updated Sep 7, 2017
mageri Public

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

bioinformatics cancer mapping mutation umi variant amplicon

Java 21 6 Other Updated May 8, 2017
mageri-paper Public

Data and post-analysis for MAGERI project

Groovy 4 2 Other Updated May 8, 2017
polyfid Public

Polymerase fidelity estimates

Groovy 1 Updated Apr 5, 2017
cdrnbs-spark-sandbox Public archive

Scala Updated Nov 24, 2016
vdj-standard Public

Tool suite for parsing V(D)J alignment results and produce AIRR standard format

Python GNU General Public License v3.0 Updated Nov 11, 2016
aging-study Public

Metadata and some analysis for the T-cell repertoire aging study

R 3 3 Updated Oct 18, 2016
seqcliutil Public

Some basic utils for operating FASTA files

Java Apache License 2.0 Updated Jul 29, 2016
vdjtools-examples Public

A set of real-world RepSeq datasets used for testing the VDJtools software

R 9 9 Updated Jul 8, 2016
igblast-bin Public

IgBlast v1.4.0 binaries dump for homebrew, etc. Please refer to official web page

4 Updated Jun 17, 2016
oncofuse Public

Predicting oncogenic potential of gene fusions

bioinformatics rna-seq fusion

Groovy 12 4 Other Updated Feb 13, 2016
jsres Public

Java implementation of Stochastic Ranking Evolutionary Strategy optimization algorithm.

Java 5 Apache License 2.0 Updated Oct 14, 2015
juncstat Public

Some statistics over RNA-seq aligner junctions files

Groovy Updated Oct 10, 2015
mixcr Public
Forked from milaboratory/mixcr

MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.

Java 1 Other Updated May 17, 2015
duplicates Public

Analysis of duplicate reads in Illumina sequencing

Groovy 2 1 Apache License 2.0 Updated Nov 2, 2014
exome-misc Public

Miscellaneous tools for exome-seq: annotating SNP, counting molecules on start, etc

Groovy 1 Apache License 2.0 Updated May 22, 2014