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Issues list

Support secrets in tool requirements area/testing/integration area/testing area/tool-dependencies area/tool-framework
#19084 opened Oct 30, 2024 by arash77 • Draft
2 of 4 tasks
1
4
Add conda hash to mulled-hash utility area/tool-dependencies area/tool-framework
#18938 opened Oct 4, 2024 by natefoo • Draft
2 of 4 tasks
24.2
3
Isolate singularity containers more thoroughly for better reproducibility. area/tool-dependencies area/tool-framework
#18628 opened Jul 31, 2024 by rhpvorderman Loading…
2 of 4 tasks
24.2
1
11
DependencyException: Conda dependency seemingly installed but failed to build job environment. area/backend area/tool-dependencies kind/bug
#18292 opened May 31, 2024 by galaxyproject-sentryintegration bot
1
tool_util.deps: please support setting the platform for conda via dependency manager config key area/backend area/tool-dependencies help wanted also "hacktoberfest", beginner friendly set of issues
#18090 opened May 3, 2024 by mr-c
1
Converting packed Singularity images to unpacked/sandbox in CVMFS area/tool-dependencies planning
#16433 opened Jul 21, 2023 by natefoo
argument --experimental-solver: invalid choice: 'libmamba' (choose from 'classic') area/backend area/tool-dependencies
#16124 opened May 21, 2023 by pvanheus
@nsoranzo
3
Dependencies shows "unresolved" for containers area/tool-dependencies
#15859 opened Mar 28, 2023 by hexylena
1
Stricter docstrings parsing area/API area/auth Authentication and authorization area/database Galaxy's database or data access layer area/datatypes area/dependencies area/jobs area/libraries Data libraries area/objectstore area/reports area/scripts area/testing/integration area/testing/selenium area/testing area/tool-dependencies area/tool-framework area/tools area/util area/workflows
#15630 opened Feb 21, 2023 by bernt-matthias Loading…
2 of 4 tasks
Per-job conda environments are built regardless of auto_install whenever one or more deps exist but a mulled env does not exist for multi-requirement tools area/backend area/tool-dependencies kind/bug
#13711 opened Apr 12, 2022 by natefoo
3
Setting both conda_exec and conda_prefix overrides conda_prefix with conda_exec prefix. area/tool-dependencies kind/bug paper-cut
#11817 opened Apr 12, 2021 by rhpvorderman
4
[WIP] Create mulled containers in 2-stage build area/testing area/tool-dependencies area/tool-framework
#9088 opened Dec 10, 2019 by mvdbeek • Draft
@mvdbeek
Deprecate resolving individual requirements if resolve_all has failed area/tool-dependencies
#7915 opened May 8, 2019 by mvdbeek
tool_script.sh contains unnecessary replicas of conda activation blocks and conda creation failure area/tool-dependencies kind/bug
#7849 opened Apr 29, 2019 by qiagu
2
Read only attribute for dependency_resolvers_conf.xml area/tool-dependencies kind/enhancement
#7348 opened Feb 11, 2019 by natefoo
5
conda_auto_install and Collections cause install/remove/install loop area/tool-dependencies kind/bug
#5655 opened Mar 7, 2018 by blankenberg
5
Avoid at sign in conda env directory names area/tool-dependencies kind/bug
#5498 opened Feb 9, 2018 by peterjc • Draft
7
Unsetting PYTHONHOME for conda commands ? area/admin area/tool-dependencies status/planning
#4597 opened Sep 12, 2017 by mvdbeek
1
Untangle repository dependencies, suites and tool dependencies area/admin area/tool-dependencies area/toolshed area/UI-UX kind/refactoring cleanup or refactoring of existing code, no functional changes status/planning
#3745 opened Mar 13, 2017 by mvdbeek
8
Add tests for conda channel order and condarc override area/testing area/tool-dependencies
#3703 opened Mar 3, 2017 by mvdbeek
@mvdbeek
Holistic Approach to Container Caching area/admin area/jobs area/tool-dependencies area/UI-UX friendliness/intermediate kind/enhancement kind/feature status/planning
#3673 opened Feb 27, 2017 by jmchilton
5 tasks
5
Document dependency mapping area/tool-dependencies kind/bug kind/enhancement
#3485 opened Jan 25, 2017 by jmchilton
Capture and interactively display shell during Conda operations. area/tool-dependencies kind/enhancement
#3309 opened Dec 13, 2016 by jmchilton
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