Krishnaswamy Lab

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PHATE PHATE Public

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

Python 465 72
MAGIC MAGIC Public

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

Jupyter Notebook 334 97
SAUCIE SAUCIE Public

Python 98 29
MELD MELD Public

Quantifying experimental perturbations at single cell resolution

Python 105 9
Multiscale_PHATE Multiscale_PHATE Public

Creating multi-resolution embeddings and clusters from high dimensional data

Jupyter Notebook 47 11
TrajectoryNet TrajectoryNet Public

TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

Jupyter Notebook 98 14

Repositories

DiffKillR Public
DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images

KrishnaswamyLab/DiffKillR’s past year of commit activity

Python 1 0 1 0 Updated Sep 20, 2024
GeoSinkhorn Public
Code for the paper Geodesic Sinkhorn for Fast and Accurate Optimal Transport on Manifolds.

KrishnaswamyLab/GeoSinkhorn’s past year of commit activity

Python 4 0 0 0 Updated Sep 18, 2024
ImageFlowNet Public
ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

KrishnaswamyLab/ImageFlowNet’s past year of commit activity

Python 7 0 0 0 Updated Sep 17, 2024
hypergraph-wavelets Public
This is the source code for implementing hyperedge representations via hypergraph wavelets.

KrishnaswamyLab/hypergraph-wavelets’s past year of commit activity

Python 0 0 0 0 Updated Sep 16, 2024
MIOFlow_growth_rate Public Forked from KrishnaswamyLab/MIOFlow

KrishnaswamyLab/MIOFlow_growth_rate’s past year of commit activity

Jupyter Notebook 0 Apache-2.0 3 0 0 Updated Sep 16, 2024
knowledge-graph-indication-expansion Public
Indication expansion through knowledge graph embeddings

KrishnaswamyLab/knowledge-graph-indication-expansion’s past year of commit activity

0 0 0 0 Updated Sep 12, 2024
PointCloudNet Public

KrishnaswamyLab/PointCloudNet’s past year of commit activity

Jupyter Notebook 0 1 0 0 Updated Aug 28, 2024
GEFMAP Public

KrishnaswamyLab/GEFMAP’s past year of commit activity

Jupyter Notebook 2 1 1 0 Updated Aug 27, 2024
blis Public
Accompanying code for the AISTATS 2024 paper BLIS-Net: Classifying and Analyzing Signals on Graphs

KrishnaswamyLab/blis’s past year of commit activity

Jupyter Notebook 1 0 0 0 Updated Aug 23, 2024
SUGAR Public
Synthesis using Geometrically Aligned Random-walks

KrishnaswamyLab/SUGAR’s past year of commit activity

MATLAB 7 1 3 0 Updated Aug 22, 2024