BiSeq
| swMATH ID: | 38457 |
| Software Authors: | Hebestreit, Katja; Klein, Hans-Ulrich |
| Description: | Bioconductor/R package BiSeq: Processing and analyzing bisulfite sequencing data. The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples. |
| Homepage: | https://bioconductor.org/packages/release/bioc/html/BiSeq.html |
| Dependencies: | R |
| Related Software: | DALEX; ggbio; HISAT; SMOTE; JASPAR; rGREAT; PePr; AS 136; iClusterPlus; MAnorm; GISTIC2.0; deFuse; normr; gmapR; KEGG; ODIN; genomation; compGenomRData; BiocManager; methylKit |
| Cited in: | 1 Document |
Cited by 4 Authors
| 1 | Akalin, Altuna |
| 1 | Franke, Verdan |
| 1 | Ronen, Jonathan |
| 1 | Uyar, Bora |
Cited in 1 Serial
| 1 | Chapman & Hall/CRC Computational Biology Series |
Cited in 2 Fields
| 1 | Statistics (62-XX) |
| 1 | Biology and other natural sciences (92-XX) |
