×

bioperl

swMATH ID: 10579
Software Authors: Stajich, J. E.
Description: The bioperl toolkit: Perl modules for the life sciences. BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. Additionally auxiliary modules for creating graphical interfaces (bioperl-gui), persistent storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (Run package), software to automate bioinformatic analyses (bioperl-pipeline) are all available as Git modules in our repository.
Homepage: http://www.bioperl.org/wiki/BioPerl
Related Software: R; PERL; Biopython; ClustalW; BLAST; EMBOSS; UniProt; BioJava; PSI-BLAST; Bioconductor; PHYLIP; DIALIGN; Cd-hit; T-coffee; MUSCLE; Soap; MAFFT; CAP3; PhyloNetwork; BioRuby
Cited in: 10 Documents
all top 5

Cited by 22 Authors

3 Fischer, Mareike
3 Wicke, Kristina
2 Valiente, Gabriel
1 Bouckaert, Remco R.
1 Carugo, Oliviero
1 Donachy, P.
1 Eisenhaber, Frank
1 El-Mabrouk, Nadia
1 Harmer, Terence J.
1 Jithesh, P. V.
1 Keith, Jonathan M.
1 Kelly, N.
1 Lafond, Manuel
1 Llabrés, Mercè
1 McCurley, M.
1 McKee, Sally A.
1 Rocha, Jairo
1 Rosselló, Francesc
1 Singh, Gautam B.
1 Swenson, Krister M.
1 Townsley, M.
1 Wasnik, S.
all top 5

Cited in 7 Serials

2 Methods in Molecular Biology
1 Journal of Mathematical Biology
1 Mathematical Biosciences
1 Advances in Applied Mathematics
1 Journal of Theoretical Biology
1 Modeling and Optimization in Science and Technologies
1 Chapman & Hall/CRC Mathematical and Computational Biology Series

Cited in 5 Fields

10 Biology and other natural sciences (92-XX)
3 Combinatorics (05-XX)
2 Computer science (68-XX)
1 General and overarching topics; collections (00-XX)
1 Statistics (62-XX)

Citations by Year