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A cautionary note on generalized linear models for covariance of unbalanced longitudinal data. (English) Zbl 1229.62096

Summary: Missing data in longitudinal studies can create enormous challenges in data analyses when coupled with the positive-definiteness constraint on a covariance matrix. For complete balanced data, the Cholesky decomposition of a covariance matrix makes it possible to remove the positive-definiteness constraint and use a generalized linear model setup to jointly model the mean and covariance using covariates [M. Pourahmadi, Biometrika 87, No. 2, 425–435 (2000; Zbl 0954.62091)]. However, this approach may not be directly applicable when the longitudinal data are unbalanced, as coherent regression models for the dependence across all times and subjects may not exist. Within the existing generalized linear model framework, we show how to overcome this and other challenges by embedding the covariance matrix of the observed data for each subject in a larger covariance matrix and employing the familiar EM algorithm to compute the maximum likelihood estimates of the parameters and their standard errors. We illustrate and assess the methodology using real data sets and simulations.

MSC:

62J12 Generalized linear models (logistic models)
62H12 Estimation in multivariate analysis
65C60 Computational problems in statistics (MSC2010)

Citations:

Zbl 0954.62091

References:

[1] Azzalini, A.; Capitanio, A., Statistical applications of the multivariate skew normal distribution, Journal of the Royal Statistical Society: Series B (Statistical Methodology), 61, 579-602 (1999) · Zbl 0924.62050
[2] Daniels, M. J., Bayesian modeling of several covariance matrices and some results on propriety of the posterior for linear regression with correlated and/or heterogeneous errors, Journal of Multivariate Analysis, 97, 1185-1207 (2006) · Zbl 1089.62025
[3] Dempster, A.; Laird, N. M.; Rubin, D. B., Maximum likelihood from incomplete data via the EM algorithm, Journal of the Royal Statistical Society: Series B, 39, 1-38 (1977) · Zbl 0364.62022
[4] Holan, S.; Spinka, C., Maximum likelihood estimation for joint mean-covariance models from unbalanced repeated-measures data, Statistics & Probability Letters, 77, 319-328 (2007) · Zbl 1106.62025
[5] Huang, J. Z.; Liu, N.; Pourahmadi, M.; Liu, L., Covariance matrix selection and estimation via penalised normal likelihood, Biometrika, 93, 85-98 (2006) · Zbl 1152.62346
[6] Jennrich, R. I.; Schluchter, M. D., Unbalanced repeated-measures models with structured covariance matrices, Biometrics, 42, 805-820 (1986) · Zbl 0625.62052
[7] Kenward, M. G., A method for comparing profiles of repeated measurements, Applied Statistics, 36, 296-308 (1987)
[8] Kotz, S.; Nadarajah, S., Multivariate T-Distributions and Their Applications (2004), Cambridge University Press · Zbl 1100.62059
[9] Levina, E.; Rothman, A.; Zhu, J., Sparse estimation of large covariance matrices via a nested lasso penalty, The Annals of Applied Statistics, 2, 245-263 (2008) · Zbl 1137.62338
[10] Lin, T. I.; Wang, Y. J., A robust approach to joint modeling of mean and scale covariance for longitudinal data, Journal of Statistical Planning and Inference, 139, 3013-3026 (2009) · Zbl 1168.62082
[11] Oakes, D., Direct calculation of the information matrix via the em algorithm, Journal of the Royal Statistical Society: Series B, 61, 479-482 (1999) · Zbl 0913.62036
[12] Pan, J. X.; MacKenzie, G., On modelling mean-covariance structures in longitudinal studies, Biometrika, 90, 239-244 (2003) · Zbl 1039.62068
[13] Pourahmadi, M., Joint mean-covariance models with applications to longitudinal data: unconstrained parameterisation, Biometrika, 86, 667-690 (1999) · Zbl 0949.62066
[14] Pourahmadi, M., Maximum likelihood estimation of generalised linear models for multivariate normal covariance matrix, Biometrika, 87, 425-435 (2000) · Zbl 0954.62091
[15] Pourahmadi, M.; Daniels, M. J., Dynamic conditionally linear mixed models for longitudinal data, Biometrics, 58, 225-231 (2002) · Zbl 1209.62152
[16] Rubin, D., Inference and missing data (with discussion), Biometrika, 63, 581-592 (1976) · Zbl 0344.62034
[17] Yap, J. S.; Fan, J.; Wu, R., Nonparametric modeling of longitudinal covariance structure in functional mapping of quantitative trait loci, Biometrics, 65, 1068-1077 (2009) · Zbl 1181.62186
[18] Ye, H.; Pan, J. X., Modelling of covariance structures in generalised estimating equations for longitudinal data, Biometrika, 93, 927-994 (2006) · Zbl 1436.62348
[19] Zimmerman, D. L.; Núñez Antón, V., Antedependence Models for Longitudinal Data (2010), Chapman & Hall/CRC Press: Chapman & Hall/CRC Press New York · Zbl 0897.62077
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