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Analysis of similarity/dissimilarity of DNA sequences based on dual nucleotides. (English) Zbl 1270.92015

Summary: Based on neighboring dual nucleotides we reduce a DNA sequence into a plot set in a four-dimensional space, and associate it with the eigenvalues of the introduced covariance matrix. The examination of similarities/dissimilarities among the coding sequences of the first exon of the \(\beta\)-globin gene belonging to eleven species illustrates the utility of our approach.

MSC:

92C40 Biochemistry, molecular biology
92-08 Computational methods for problems pertaining to biology