The logic of chromatin architecture and remodelling at promoters (Q35001999)

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scientific article

Language	Label	Description	Also known as
English	The logic of chromatin architecture and remodelling at promoters	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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Europe PubMed Central

The logic of chromatin architecture and remodelling at promoters (English)

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Europe PubMed Central

PubMed publication ID

5 August 2017

author name string

Bradley R Cairns

1

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Europe PubMed Central

PubMed publication ID

5 August 2017

language of work or name

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publication date

1 September 2009

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Europe PubMed Central

PubMed publication ID

5 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

461

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Europe PubMed Central

PubMed publication ID

5 August 2017

7261

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Europe PubMed Central

PubMed publication ID

5 August 2017

193-198

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Europe PubMed Central

PubMed publication ID

5 August 2017

Transcription regulation through promoter-proximal pausing of RNA polymerase II.

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A high-resolution atlas of nucleosome occupancy in yeast

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two strategies for gene regulation by promoter nucleosomes

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Genome-scale identification of nucleosome positions in S. cerevisiae

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleosome positions predicted through comparative genomics

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Modulation of ISWI function by site-specific histone acetylation

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Identification and distinct regulation of yeast TATA box-containing genes

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Transcription elongation factors repress transcription initiation from cryptic sites.

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Chromatin decouples promoter threshold from dynamic range

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Nucleosome organization in the Drosophila genome.

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of trans-activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Nucleosome mobilization catalysed by the yeast SWI/SNF complex

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Control of stochasticity in eukaryotic gene expression

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin remodeling by nuclear receptors

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ATP-dependent nucleosome remodeling

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Nucleosome positioning and gene regulation: advances through genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Mechanisms that specify promoter nucleosome location and identity

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https://pubmed.ncbi.nlm.nih.gov/19741699

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Chromatin remodelling at promoters suppresses antisense transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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High-resolution profiling of histone methylations in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Nucleosome destabilization in the epigenetic regulation of gene expression

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Evidence for nucleosome depletion at active regulatory regions genome-wide

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global nucleosome occupancy in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Histone octamer transfer by a chromatin-remodeling complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Poly(dA:dT) tracts: major determinants of nucleosome organization

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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The SAGA unfolds: convergence of transcription regulators in chromatin-modifying complexes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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A genomic code for nucleosome positioning

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Noise in gene expression: origins, consequences, and control

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The DNA-encoded nucleosome organization of a eukaryotic genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Saccharomyces cerevisiae histone H2A variant Htz1 is acetylated by NuA4.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Colworth memorial lecture. Pathways for remodelling chromatin

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Cooperation between complexes that regulate chromatin structure and transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ATP-dependent remodeling and acetylation as regulators of chromatin fluidity

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antagonistic forces that position nucleosomes in vivo.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic regulation of nucleosome positioning in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin remodelling: the industrial revolution of DNA around histones

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https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of chromatin during transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/19741699

12 December 2020

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Identifiers

10.1038/NATURE08450

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Dimensions Publication ID

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

ResearchGate publication ID

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