ENCODE data in the UCSC Genome Browser: year 5 update (Q28280234)

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scientific article

Language	Label	Description	Also known as
English	ENCODE data in the UCSC Genome Browser: year 5 update	scientific article

Statements

scholarly article

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ENCODE data in the UCSC Genome Browser: year 5 update (English)

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1 reference

based on heuristic

inferred from title

20

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Venkat S Malladi

3

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Steven P Wilder

16

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Donna Karolchik

18

object named as

Donna Karolchik

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14

object named as

Mark Diekhans

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17

object named as

Ann S Zweig

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Kate R. Rosenbloom

1

object named as

Kate R Rosenbloom

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21

object named as

W James Kent

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Katrina Learned

5

object named as

Katrina Learned

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19

object named as

Robert M Kuhn

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12

object named as

Galt P Barber

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Rachel A. Harte

13

object named as

Rachel A Harte

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Timothy R Dreszer

4

object named as

Timothy R Dreszer

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11

object named as

Brian T Lee

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2

object named as

Cricket A Sloan

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Vanessa M Kirkup

6

object named as

Vanessa M Kirkup

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author name string

Matthew C Wong

7

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Morgan Maddren

8

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Ruihua Fang

9

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Steven G Heitner

10

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Jeffrey C Long

15

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language of work or name

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publication date

January 2013

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Nucleic Acids Research

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41

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Database issue

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D56-63

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copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

GENCODE: the reference human genome annotation for The ENCODE Project

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

An integrated encyclopedia of DNA elements in the human genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

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20 March 2017

NCBI GEO: archive for functional genomics data sets--10 years on

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

ENCODE whole-genome data in the UCSC genome browser (2011 update)

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

Retrocopy contributions to the evolution of the human genome

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20 March 2017

Model-based analysis of ChIP-Seq (MACS)

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20 March 2017

The human genome browser at UCSC

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

20 March 2017

Landscape of transcription in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

7 April 2017

The ENCODE (ENCyclopedia Of DNA Elements) Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

7 April 2017

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

An encyclopedia of mouse DNA elements (Mouse ENCODE).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

ChromHMM: automating chromatin-state discovery and characterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

The UCSC Genome Browser database: extensions and updates 2011.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

ENCODE whole-genome data in the UCSC Genome Browser

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

Design and analysis of ChIP-seq experiments for DNA-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

Mapping networks of physical interactions between genomic elements using 5C technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531152

29 September 2017

A user's guide to the encyclopedia of DNA elements (ENCODE)

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1172

21 January 2018

PseudoPipe: an automated pseudogene identification pipeline

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1172

21 January 2018

Identifiers

10.1093/NAR/GKS1172

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/nar/RosenbloomSMDLKWMFHLBHDLWZKKHK13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

0 references

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