The population genetics and evolutionary epidemiology of RNA viruses (Q35697519)

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scientific article published on April 2004

Language	Label	Description	Also known as
English	The population genetics and evolutionary epidemiology of RNA viruses	scientific article published on April 2004

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

1 reference

Europe PubMed Central

The population genetics and evolutionary epidemiology of RNA viruses (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

population genetics

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Edward C. Holmes

2

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Fernando González-Candelas

3

object named as

Fernando González-Candelas

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

language of work or name

0 references

publication date

1 April 2004

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Nature Reviews Microbiology

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

279-288

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

RNA virus mutations and fitness for survival

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Unifying the epidemiological and evolutionary dynamics of pathogens

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Recombination in evolutionary genomics

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

High rates of human immunodeficiency virus type 1 recombination: near-random segregation of markers one kilobase apart in one round of viral replication

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Effect of population patchiness and migration rates on the adaptation and divergence of vesicular stomatitis virus quasispecies populations.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Is the quasispecies concept relevant to RNA viruses?

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Evolvability of an RNA virus is determined by its mutational neighbourhood

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Experimental evolution recapitulates natural evolution

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Restrictions to RNA virus adaptation: an experimental approach

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Evolutionary dynamics of viral attenuation

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage phi6.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Clonal interference and the evolution of RNA viruses.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Contributions of vesicular stomatitis virus to the understanding of RNA virus evolution

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Fitness of RNA virus decreased by Muller's ratchet

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Evolution of sex and the molecular clock in RNA viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Different trajectories of parallel evolution during viral adaptation

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

The rhythm of microbial adaptation.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Prisoner's dilemma in an RNA virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Escape from Prisoner’s Dilemma in RNA Phage Φ6

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Genome complexity, robustness and genetic interactions in digital organisms.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Evolution of digital organisms at high mutation rates leads to survival of the flattest

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

The molecular epidemiology of influenza

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Measurably evolving populations

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

The inference of stepwise changes in substitution rates using serial sequence samples

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

The Genome sequence of the SARS-associated coronavirus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Tracing the origin and history of the HIV-2 epidemic

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Molecular epidemiology of an outbreak of infection with hepatitis C virus in recipients of anti-D immunoglobulin

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Transmission of hepatitis C virus by a cardiac surgeon.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Evidence of recombination in natural populations of hepatitis A virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

A Natural Intergenotypic Recombinant of Hepatitis C Virus Identified in St. Petersburg

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Timing the ancestor of the HIV-1 pandemic strains

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Origin and evolution of GBV-C/hepatitis G virus and relationships with ancient human migrations

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

The epidemic behavior of the hepatitis C virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Selection forces and constraints on retroviral sequence variation.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Molecular Clocks and the Puzzle of RNA Virus Origins

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Toward a comprehensive phylogeny for mammalian and avian herpesviruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Emerging infectious diseases of wildlife--threats to biodiversity and human health

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Population biology of multihost pathogens

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Error thresholds and the constraints to RNA virus evolution

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Evolution of cell recognition by viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Risk to human health from a plethora of simian immunodeficiency viruses in primate bushmeat

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

AIDS as a zoonosis: scientific and public health implications

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Characterization of a novel coronavirus associated with severe acute respiratory syndrome

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Phylogeny of the SARS coronavirus.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Mosaic evolution of the severe acute respiratory syndrome coronavirus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Predicting the evolution of human influenza A.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

High diversity of unknown picorna-like viruses in the sea.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Disease transmission dynamics and the evolution of antibiotic resistance in hospitals and communal settings

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Down or out in blood and lymph?

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Recovery of replication-competent HIV despite prolonged suppression of plasma viremia

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Recombination: Multiply infected spleen cells in HIV patients

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Virus dynamics and drug therapy

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Infectivity and replication capacity of drug-resistant human immunodeficiency virus type 1 variants isolated during primary infection

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Safety and immunogenicity of combinations of recombinant subtype E and B human immunodeficiency virus type 1 envelope glycoprotein 120 vaccines in healthy Thai adults.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Antibody neutralization and escape by HIV-1

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Virulence and transmissibility of pathogens: what is the relationship?

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Challenging the trade-off model for the evolution of virulence: is virulence management feasible?

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Molecular evidence of HIV-1 transmission in a criminal case

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Molecular epidemiology and forensic genetics: application to a hepatitis C virus transmission event at a hemodialysis unit.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Rate of deleterious mutation and the distribution of its effects on fitness in vesicular stomatitis virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

The biology of digital organisms

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

Population Biology, Evolution, and Infectious Disease: Convergence and Synthesis

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

21 January 2018

FREQUENCY-DEPENDENT SELECTION IN A MAMMALIAN RNA VIRUS.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Rates of spontaneous mutation among RNA viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Selforganization of matter and the evolution of biological macromolecules

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Nucleotide sequence heterogeneity of an RNA phage population.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Evidence for the non-quasispecies evolution of RNA viruses [corrected]

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Experimental Evolution of Parasites

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Experimental genomic evolution: extensive compensation for loss of DNA ligase activity in a virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

EVOLUTIONARY DYNAMICS OF FITNESS RECOVERY FROM THE DEBILITATING EFFECTS OF MULLER'S RATCHET.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

The red queen reigns in the kingdom of RNA viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Macroevolution simulated with autonomously replicating computer programs

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

On the Genealogy of Large Populations

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Properties of a neutral allele model with intragenic recombination

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Molecular epidemiology of HIV transmission in a dental practice

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Episodic evolution of RNA viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Punctuated equilibrium and positive Darwinian evolution in vesicular stomatitis virus

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Factors in the emergence of infectious diseases

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Reduced positive selection in vector-borne RNA viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Analysis of influenza A virus nucleoproteins for the assessment of molecular genetic mechanisms leading to new phylogenetic virus lineages.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Preferential host switching by primate lentiviruses can account for phylogenetic similarity with the primate phylogeny

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Reduced replication of 3TC-resistant HIV-1 variants in primary cells due to a processivity defect of the reverse transcriptase enzyme.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Positive Darwinian evolution in human influenza A viruses

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Superinfection and the evolution of parasite virulence.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Genotypic and phenotypic characterization of HIV-1 patients with primary infection

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO863

31 March 2020

Evolutionary relationship of DNA sequences in finite populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The rate and character of spontaneous mutation in an RNA virus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA virus quasispecies populations can suppress vastly superior mutant progeny

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Models of experimental evolution: the role of genetic chance and selective necessity.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Virus evolution and genetic diversity of hantaviruses and their rodent hosts.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The advantage of sex in the RNA virus phi6

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates and dates of divergence between AIDS virus nucleotide sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluating the impact of population bottlenecks in experimental evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microevolution in an electronic microcosm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic diversity and tissue compartmentalization of the hepatitis C virus genome in blood mononuclear cells, liver, and serum from chronic hepatitis C patients

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemokine coreceptor usage by diverse primary isolates of human immunodeficiency virus type 1

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Population dynamics of HIV-1 inferred from gene sequences.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of deleterious mutation-accumulation on the fitness of RNA bacteriophage MS2

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular basis of adaptive convergence in experimental populations of RNA viruses.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An integrated framework for the inference of viral population history from reconstructed genealogies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exceptional convergent evolution in a virus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15031727

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/NRMICRO863

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Dimensions Publication ID

0 references

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

ResearchGate publication ID

0 references

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