An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs (Q34569900)

From Wikidata

Revision as of 11:07, 6 July 2024 by Twofivesixbot (talk | contribs) (‎Updated Item: rm P2888 pointing to scigraph.springernature.com; site discontinued and merely duplicating DOI)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

author name string

Tzu-Hao Chang

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Hsi-Yuan Huang

2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Justin Bo-Kai Hsu

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Shun-Long Weng

4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Jorng-Tzong Horng

5

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Hsien-Da Huang

6

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

publication date

21 January 2013

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

14 Suppl 2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

S4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

copyright license

Creative Commons Attribution 2.0 Generic

1 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Computational identification of riboswitches based on RNA conserved functional sequences and conformations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Infernal 1.0: inference of RNA alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

The structural and functional diversity of metabolite-binding riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Rfam: updates to the RNA families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Riboswitches: emerging themes in RNA structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

RNALogo: a new approach to display structural RNA alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

NONCODE v2.0: decoding the non-coding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

miRBase: tools for microRNA genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Nuclear transcription of long hairpin RNA triggers innate immune responses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

miRBase: the microRNA sequence database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

RegRNA: an integrated web server for identifying regulatory RNA motifs and elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Hairpin RNA: a secondary structure of primary importance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

ASD: a bioinformatics resource on alternative splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Rfam: annotating non-coding RNAs in complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

NONCODE: an integrated knowledge database of non-coding RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Human MicroRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

MATCH: A tool for searching transcription factor binding sites in DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

ARED 2.0: an update of AU-rich element mRNA database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

TRANSFAC: transcriptional regulation, from patterns to profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

RNAMotif, an RNA secondary structure definition and search algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

GeneSplicer: a new computational method for splice site prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

7 July 2018

Prediction of C-to-U RNA editing sites in plant mitochondria using both biochemical and evolutionary information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

27 October 2018

Prediction of mRNA polyadenylation sites by support vector machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

27 October 2018

A probabilistic method for identifying start codons in bacterial genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549854

27 October 2018

Identifiers

10.1186/1471-2105-14-S2-S4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

DBLP publication ID

journals/bmcbi/ChangHHWHH13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34569900&oldid=2196805484"