Landscape of somatic retrotransposition in human cancers (Q29617664)

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6 February 2020

title

Landscape of somatic retrotransposition in human cancers (English)

2 references

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30 April 2017

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6 February 2020

1 reference

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6 February 2020

Peter V Kharchenko

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6 February 2020

Jens G Lohr

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6 February 2020

Richard A Gibbs

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6 February 2020

Eunjung Lee

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6 February 2020

Rebecca Iskow

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6 February 2020

Lixing Yang

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6 February 2020

Psalm Haseley

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6 February 2020

Lovelace J Luquette

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6 February 2020

Christopher C Harris

1 reference

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6 February 2020

Li Ding

1 reference

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6 February 2020

Richard K Wilson

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6 February 2020

David A Wheeler

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6 February 2020

Raju Kucherlapati

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6 February 2020

Charles Lee

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6 February 2020

Peter J Park

1 reference

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6 February 2020

Cancer Genome Atlas Research Network

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language of work or name

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30 April 2017

publication date

28 June 2012

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6 February 2020

2 references

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30 April 2017

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6 February 2020

volume

337

2 references

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30 April 2017

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6 February 2020

issue

6097

2 references

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30 April 2017

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6 February 2020

page(s)

967-971

1 reference

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Active human retrotransposons: variation and disease

6 February 2020

cites work

1 reference

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Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Natural mutagenesis of human genomes by endogenous retrotransposons

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

LINE-1 retrotransposition activity in human genomes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

PLAGL2 regulates Wnt signaling to impede differentiation in neural stem cells and gliomas

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Transposable elements and the epigenetic regulation of the genome

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Somatic retrotransposition alters the genetic landscape of the human brain

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans

30 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

The genomic complexity of primary human prostate cancer

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

Initial genome sequencing and analysis of multiple myeloma

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

Repbase Update, a database of eukaryotic repetitive elements

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

CAP3: A DNA sequence assembly program

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

MEME SUITE: tools for motif discovery and searching

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

Mapping and analysis of chromatin state dynamics in nine human cell types

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

1 May 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1222077

Glucocorticoid regulation of SLIT/ROBO tumour suppressor genes in the ovarian surface epithelium and ovarian cancer cells

1 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Molecular karyotypes of Hodgkin and Reed-Sternberg cells at disease onset reveal distinct copy number alterations in chemosensitive versus refractory Hodgkin lymphoma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

A human genome structural variation sequencing resource reveals insights into mutational mechanisms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

PARK2 deletions occur frequently in sporadic colorectal cancer and accelerate adenoma development in Apc mutant mice.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Involvement of G-patch domain containing 2 overexpression in breast carcinogenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

A microhomology-mediated break-induced replication model for the origin of human copy number variation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Keeping active endogenous retroviral-like elements in check: the epigenetic perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Hypermethylation of the nel-like 1 gene is a common and early event and is associated with poor prognosis in early-stage esophageal adenocarcinoma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Frequent silencing of DBC1 is by genetic or epigenetic mechanisms in non-small cell lung cancers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Mobile elements and the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656569

3 June 2018

Identifiers

DOI

10.1126/SCIENCE.1222077

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22745252

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22745252%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22745252

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22745252%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22745252

6 February 2020

PubMed publication ID

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22745252%20AND%20SRC:MED&resulttype=core&format=json