Jump to content

BIM-1: Difference between revisions

From Wikipedia, the free encyclopedia
Browse history interactively
← Previous editNext edit →
Content deleted Content added
VisualWikitext
Emissrto (talk | contribs)
423 edits
Added Protbox (interwiki →Function)4 Pfam_box of 1/2 PDB3's @| UniProt=O15530 found in SCOP Pfam_box→Het Group BI1
Emissrto (talk | contribs)
423 edits
(Updating {{protbox}} to typo Band=6p21 (report if errors added or verified .2
Line 65: Line 65:
|Chromosome=6
|Chromosome=6
|Arm=p
|Arm=p
|Band=21
|Band=21
|LocusSupplementaryData=
|LocusSupplementaryData=
}}
}}

Revision as of 05:10, 5 January 2011

BIM-1
Names
IUPAC name
3-{1-[3-(dimethylamino)propyl]-1H-indol-3-yl}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione
Other names
RBT205 INHIBITOR, BI1
Identifiers
3D model (JSmol)
ChemSpider
DrugBank
ECHA InfoCard 100.122.321 Edit this at Wikidata
MeSH bisindolylmaleimide
  • InChI=1S/C25H24N4O2/c1-28(2)12-7-13-29-15-19(17-9-4-6-11-21(17)29)23-22(24(30)27-25(23)31)18-14-26-20-10-5-3-8-16(18)20/h3-6,8-11,14-15,26H,7,12-13H2,1-2H3,(H,27,30,31)
  • O=C5C(\c2c1ccccc1nc2)=C(\c4c3ccccc3n(c4)CCCN(C)C)C(=O)N5
Properties
C25H24N4O2
Molar mass 412.484
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
Het Group BI1
Identifiers
SymbolHet Group/Ligand: BI1
PfamPF00069
SCOP21uu8 / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
PDB1xwsA:92-404 2bikB:92-404 1uu8A:51-360

2bilB:92-404 1zrzA:224-587 1h1wA:71-359 1okyA:51-360 1uu3A:51-360 1yi4A:124-396 1uu7A:51-360 1uu9A:72-357 1uvrA:71-359

1okzA51-360 1yhsA:124-396 1yi3A:124-396
Proto-oncogene serine/threonine-protein kinase pim-1
PDB rendering based on 1xqz.
Identifiers
SymbolPIM1
NCBI gene5292
HGNC8986
OMIM164960
PDB1YI3
RefSeqNM_002648
UniProtP11309
Other data
EC number2.7.11.1
LocusChr. 6 p21.2
Search for
StructuresSwiss-model
DomainsInterPro

Template:Protbox finish BIM-1, BIM-2, BIM-3, and BIM-8 are bisindolyl maleimide-based, nanomolar protein kinase C inhibitors. These inhibitors also inhibit PDK1 explaining the higher inhibitory potential of LY33331 compared to the other BIM compounds a bisindolylmaleimide inhibitor toward PDK1.[1]

Function

The protein kinase C (PKC)[2] inhibitor Bis(indolyl)maleimide inhibitor BIM1[1] is clearly seen in the structure of PKCiota[3] (residue 574-turn[4] motif), need to be phosphorylated towards a PKCbeta-specific inhibitor site-directed mutagenesis of the compound for its full activation[5] and co-crystallized as an asymmetric pair which is mediated by 3-phosphoinositide-dependent protein kinase-1 (PDK1)[6] are downstream characteristics of PKCs and PKB/AKT[7].

Scope

The bound BIM1 inhibitor blocks bilobal[8] interactions, the ATP-binding site, features an ATP-competitive inhibitor, 2-methyl-1H-indol-3-yl-BIM-1[8], the crystal structure[8] and catalytic subunit with a 20-amino acid substrate analog inhibitor structure is bilobal MgATP a transport protein that provide a more precise description of which is influenced by lobe-lobe interactions binding in cells expressing both forms a pair of kinase-inhibitor complexes[7] with ferritin in a soluble and non-toxic form (Poisson-Boltzmann[9]) and a portion of the inhibitor peptide[10] a lysine residue, has been shown to be involved in ATP binding.

Interactions

The PKCiota-BIM1 complex[4] interacts with the zinc finger of lambda/iota PKC characterization of lambda-interacting protein (LIP)[5] (lambda-interacting protein; a selective activator of lambda/iotaPKC). Phosphorylation of a PKC induces a conformation leading to import of a PKC into the nucleus.[11] The entire 587-amino acid coding region of a new PKC isoform, PKC iota.[11] Where Thr-412[5][12] (activation loop of the kinase domain) at PKCiota/lambda phosphorylates glyceraldehyde-3-phosphate dehydrogenase (GAPDH)[13] that sort cargo to the anterograde pathway[14] the phosphorylation pathway(s) involved in this phenomenon[2] mimic glutamate and can adopt two limiting diastereomeric (syn and anti) conformation[15] biosynthetically related indolocarbazole analogs[16] and in Proto-oncogene serine/threonine-protein kinase Pim-1-Peptide as a phosphorylation target including itself. The bound BIM1 inhibitor blocks the ATP-binding site and puts the kinase domain into an intermediate open[7] conformation.[4] The value of such calculations lies in understanding[9] a variant was designed which showed improved binding characteristics[17] of configurationally stable atropisomeric bisindolylmaleimides[15] where the two kinase domains, and two different inhibitor conformers bind in different orientations[7], the hinge region of staurosporine[18]-Pim-1 resembles[19] co-crystallized[8] as an asymmetric pair of biosynthetically 'related' indolocarbazole analogs.

References

  1. ^ a b Komander D, Kular GS, Schüttelkopf AW, Deak M, Prakash KR, Bain J, Elliott M, Garrido-Franco M, Kozikowski AP, Alessi DR, van Aalten DM. (2004). "Interactions of LY333531 and other bisindolyl maleimide inhibitors with PDK1". Structure. 12 (2): 215–26. doi:10.1016/S0969-2126(04)00007-3. PMID 14962382. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  2. ^ a b Cartee L, Smith R, Dai Y, Rahmani M, Rosato R, Almenara J, Dent P, Grant S. (2002). "Synergistic induction of apoptosis in human myeloid leukemia cells by phorbol 12-myristate 13-acetate and flavopiridol proceeds via activation of both the intrinsic and tumor necrosis factor-mediated extrinsic cell death pathways". Mol Pharmacol. 61 (6): 1313–21. doi:10.1124/mol.61.6.1313. PMID 12021392. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  3. ^ Baldwin RM, Parolin DA, Lorimer IA. (2008). "Regulation of glioblastoma cell invasion by PKC iota and RhoB". Oncogene. 27 (25): 3587–95. doi:10.1038/sj.onc.1211027. PMID 18212741. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  4. ^ a b c Messerschmidt A, Macieira S, Velarde M, Bädeker M, Benda C, Jestel A, Brandstetter H, Neuefeind T, Blaesse M. (2005). "Crystal structure of the catalytic domain of human atypical protein kinase C-iota reveals interaction mode of phosphorylation site in turn motif". J Mol Biol. 352 (4): 918–31. doi:10.1016/j.jmb.2005.07.060. PMID 16125198. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  5. ^ a b c Diaz-Meco MT, Municio MM, Sanchez P, Lozano J, Moscat J. (1996). "Lambda-interacting protein, a novel protein that specifically interacts with the zinc finger domain of the atypical protein kinase C isotype lambda/iota and stimulates its kinase activity in vitro and in vivo". Mol Cell Biol. 16 (1): 105–14. PMC 230983. PMID 8524286. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) Cite error: The named reference "pmid8524286" was defined multiple times with different content (see the help page).
  6. ^ Peifer C, Alessi DR. (2008). "Small-molecule inhibitors of PDK1". ChemMedChem. 3 (12): 1810–38. doi:10.1002/cmdc.200800195. PMID 18972468. {{cite journal}}: Unknown parameter |month= ignored (help)
  7. ^ a b c d Gassel M, Breitenlechner CB, König N, Huber R, Engh RA, Bossemeyer D. (2004). "The protein kinase C inhibitor bisindolyl maleimide 2 binds with reversed orientations to different conformations of protein kinase A.". J Biol Chem. 279 (22): 23679–90. doi:10.1074/jbc.M314082200. PMID 14996846. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link) Cite error: The named reference "pmid14996846" was defined multiple times with different content (see the help page).
  8. ^ a b c d Grodsky Grodsky N, Li Y, Bouzida D, Love R, Jensen J, Nodes B, Nonomiya J, Grant S. (2006). "Structure of the catalytic domain of human protein kinase C beta II complexed with a bisindolylmaleimide inhibitor". Biochemistry. 45 (47): 13970. doi:10.1021/bi061128h. PMID 17115692. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) Cite error: The named reference "pmid17115692" was defined multiple times with different content (see the help page).
  9. ^ a b Page CS, Bates PA. (2006). "Can MM-PBSA calculations predict the specificities of protein kinase inhibitors?". J Comput Chem. 27 (16): 1990–2007. doi:10.1002/jcc.20534. PMID 17036304. {{cite journal}}: Unknown parameter |month= ignored (help) Cite error: The named reference "pmid17036304" was defined multiple times with different content (see the help page).
  10. ^ Knighton DR, Zheng JH, Ten Eyck LF, Ashford VA, Xuong NH, Taylor SS, Sowadski JM. (1991). "Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase". Science. 253 (5018): 407–14. doi:10.1126/science.1862342. PMID 1862342. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  11. ^ a b White WO, Seibenhener ML, Wooten MW. (2002). "Phosphorylation of tyrosine 256 facilitates nuclear import of atypical protein kinase C.". J Cell Biochem. 85 (1): 42–53. doi:10.1002/jcb.10101. PMID 11891849. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  12. ^ Cantin GT, Yi W, Lu B, Park SK, Xu T, Lee JD, Yates JR 3rd. (2008). "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis". J Proteome Res. 7 (3): 1346–51. doi:10.1021/pr0705441. PMID 18220336. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) CS1 maint: numeric names: authors list (link)
  13. ^ Tisdale EJ. (2003). "Rab2 interacts directly with atypical protein kinase C (aPKC) iota/lambda and inhibits aPKCiota/lambda-dependent glyceraldehyde-3-phosphate dehydrogenase phosphorylation". J Biol Chem. 278 (52): 52424–30. doi:10.1074/jbc.M309343200. PMID 14570876. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: unflagged free DOI (link)
  14. ^ Tisdale EJ, Artalejo CR. (2006). "Src-dependent aprotein kinase C iota/lambda (aPKCiota/lambda) tyrosine phosphorylation is required for aPKCiota/lambda association with Rab2 and glyceraldehyde-3-phosphate dehydrogenase on pre-golgi intermediates". J Biol Chem. 281 (13): 8436–42. doi:10.1074/jbc.M513031200. PMID 16452474. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: unflagged free DOI (link)
  15. ^ a b Barrett S, Bartlett S, Bolt A, Ironmonger A, Joce C, Nelson A, Woodhall T. (2005). "Configurational stability of bisindolylmaleimide cyclophanes: from conformers to the first configurationally stable, atropisomeric bisindolylmaleimides". Chemistry. 11 (21): 6277–85. doi:10.1002/chem.200500520. PMID 16075446. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) Cite error: The named reference "pmid16075446" was defined multiple times with different content (see the help page).
  16. ^ Sánchez C, Méndez C, Salas JA. (2006). "Indolocarbazole natural products: occurrence, biosynthesis, and biological activity". Nat Prod Rep. 23 (6): 1007–45. doi:10.1039/B601930G. PMID 17119643. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  17. ^ Bandeiras TM, Hillig RC, Matias PM, Eberspaecher U, Fanghänel J, Thomaz M, Miranda S, Crusius K, Pütter V, Amstutz P, Gulotti-Georgieva M, Binz HK, Holz C, Schmitz AA, Lang C, Donner P, Egner U, Carrondo MA, Müller-Tiemann B. (2008). "Structure of wild-type Plk-1 kinase domain in complex with a selective DARPin". Acta Crystallogr D Biol Crystallogr. 64 (4): 339–53. doi:10.1107/S0907444907068217. PMID 18391401. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
  18. ^ Lee SK, Stern PH. (2000). "Divergent effects of protein kinase C (PKC) inhibitors staurosporine and bisindolylmaleimide I (GF109203X) on bone resorption". Biochem Pharmacol. 60 (7): 923–6. doi:10.1016/S0006-2952(00)00418-4. PMID 10974200. {{cite journal}}: Unknown parameter |month= ignored (help)
  19. ^ M.D.Jacobs,J.Black,O.Futer,L.Swenson,B.Hare,M.Fleming, K.Saxena (2005). "Pim-1 ligand-bound structures reveal the mechanism of serine/threonine kinase inhibition by LY294002". J Biol Chem. 280 (14): 13728–13734. doi:10.1074/jbc.M413155200. PMID 15657054. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link)


Retrieved from "https://en.wikipedia.org/w/index.php?title=BIM-1&oldid=406030108"