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AskBeacon -- Performing genomic data exchange and analytics with natural language
Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer
Oct 23 2024 cs.AI cs.CY q-bio.GN arXiv:2410.16700v1

@misc{2410.16700, author = {Anuradha Wickramarachchi and Shakila Tonni and Sonali Majumdar and Sarvnaz Karimi and Sulev Kõks and Brendan Hosking and Jordi Rambla and Natalie A.~Twine and Yatish Jain and Denis C.~Bauer}, title = {{A}sk{B}eacon -- {P}erforming genomic data exchange and analytics with natural language}, year = {2024}, eprint = {2410.16700}, note = {arXiv:2410.16700v1} }
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Enabling clinicians and researchers to directly interact with global genomic data resources by removing technological barriers is vital for medical genomics. AskBeacon enables Large Language Models to be applied to securely shared cohorts via the GA4GH Beacon protocol. By simply "asking" Beacon, actionable insights can be gained, analyzed and made publication-ready.