The DynDom database of protein domain motions
RA Lee, M Razaz, S Hayward�- Bioinformatics, 2003 - academic.oup.com
… The database described here aims to bring together all cases of domain motions in the
structural database as determined by the domain motion analysis program DynDom (Hayward …
structural database as determined by the domain motion analysis program DynDom (Hayward …
A comprehensive and non-redundant database of protein domain movements
… : The current DynDom database of protein domain motions is a user-created database that
… and a non-redundant description of domain movements from structures stored in the current …
… and a non-redundant description of domain movements from structures stored in the current …
[HTML][HTML] Database of ligand-induced domain movements in enzymes
… in the DynDom database of protein domain motions. Figure 2 shows the database schema.
The three tables at the top of the figure, "protein_family", "dyndom_run", and "domain" existed …
The three tables at the top of the figure, "protein_family", "dyndom_run", and "domain" existed …
The DynDom3D webserver for the analysis of domain movements in multimeric proteins
C Girdlestone, S Hayward�- Journal of Computational Biology, 2016 - liebertpub.com
… Its inputs are two structure files that indicate a possible domain movement, but the onus has
… of domain motions in proteins from conformational change: DynDom version 1.50. J. Mol. …
… of domain motions in proteins from conformational change: DynDom version 1.50. J. Mol. …
Structural principles governing domain motions in proteins
S Hayward�- Proteins: Structure, Function, and Bioinformatics, 1999 - Wiley Online Library
… In this work, DynDom has been used to analyze 24 proteins … the domain motion of each
of the 24 proteins individually, but … that may govern domain motions in proteins. For those …
of the 24 proteins individually, but … that may govern domain motions in proteins. For those …
[HTML][HTML] Classification of domain movements in proteins using dynamic contact graphs
… DataBase of Protein Domain Movements (NRDPDM) showed that protein domain movements
… There is also a link to the corresponding DynDom page for that domain movement which …
… There is also a link to the corresponding DynDom page for that domain movement which …
[PDF][PDF] Classification of Protein Domain Movements using Dynamic Contact Graphs
D Taylor - 2014 - ueaeprints.uea.ac.uk
… These protein domain movements are the subject of this study. Structures of proteins are
determined … identified by DynDom and the changes in contacts between residues from different …
determined … identified by DynDom and the changes in contacts between residues from different …
[HTML][HTML] D3PM: a comprehensive database for protein motions ranging from residue to domain
C Peng, X Zhang, Z Xu, Z Chen, Y Yang, T Cai…�- BMC�…, 2022 - Springer
… Databases of protein domain motions have been also available in recent years, for example
the DynDom database [16,… a database that covers all kinds of protein motions ranging from …
the DynDom database [16,… a database that covers all kinds of protein motions ranging from …
Quantitative method for the assignment of hinge and shear mechanism in protein domain movements
… To improve statistics, we used the DynDom program directly on structures provided at the
DBMM, which gave an extra two examples to add to the 21 from NRDPDM2d in the shear …
DBMM, which gave an extra two examples to add to the 21 from NRDPDM2d in the shear …
ProMode: a database of normal mode analyses on protein molecules with a full-atom model
H Wako, M Kato, S Endo�- Bioinformatics, 2004 - academic.oup.com
… protein at residue and atom levels. The dynamic domains defined by DynDom and their
mutual motions are also helpful to understand the dynamics of the proteins. With the collection of …
mutual motions are also helpful to understand the dynamics of the proteins. With the collection of …