The EBI search engine: EBI search as a service—making biological data accessible for all

YM Park, S Squizzato, N Buso, T Gur…�- Nucleic acids�…, 2017 - academic.oup.com
… , genomics, proteomics and metabolomics; the EBI Metagenomics … EBI Search as a
Service is used to provide fast lookup of annotations, as in the EBI HMMER service (https://www.ebi

The EMBL-EBI bioinformatics web and programmatic tools framework

W Li, A Cowley, M Uludag, T Gur…�- Nucleic acids�…, 2015 - academic.oup.com
EBI applications allows users access to a range of services through uniform interfaces and
helps the maintenance of a robust, relevant service … Integration of other resources such as EBI

EMBL's European bioinformatics Institute (EMBL-EBI) in 2022

M Thakur, A Bateman, C Brooksbank…�- Nucleic Acids�…, 2023 - academic.oup.com
… on services that EMBL-EBIEBI continues to lead many activities of the Proteomics Standards
Initiative (PSI), the organisation in charge of developing open data standards in proteomics

Relevance of proteomics standards for the ProteoRed Spanish organization

S Martinez-Bartolome, F Blanco, JP Albar�- Journal of proteomics, 2010 - Elsevier
proteomic services and coordination of price scales) to homogenize the list of proteomics
services … of HUPO-PSI and EBI standards as a common way to exchange proteomics data. The …

A guide to the Proteomics Identifications Database proteomics data repository

JA Vizca�no, R C�t�, F Reisinger, J M. Foster…�- …, 2009 - Wiley Online Library
… These services are also very popular in their own right, and both direct web interfaces as …
into the EBI's new meta search tool (“EB-eye”), accessible at the top from every single EBI page…

Preparing to Work with Big Data in Proteomics–A Report on the HUPO‐PSI Spring Workshop: April 15–17, 2013, Liverpool, UK

S Orchard, PA Binz, AR Jones, JA Vizcaino…�- …, 2013 - Wiley Online Library
… The group has recently been awarded a BBSRC grant ‘PROCESS’ (Proteomics data … in
collaboration with the Proteomics Services Team at the European Bioinformatics Institute (EBI), to …

Proteomics standards initiative: fifteen years of progress and future work

EW Deutsch, S Orchard, PA Binz…�- Journal of proteome�…, 2017 - ACS Publications
… of proteomic sciences in China. The Phoenix Center groups have achieved fast proteome
… A prototype service will be built at EMBL-EBI for testing by other service providers before a …

The HUPO proteomics standards initiative–overcoming the fragmentation of proteomics data

H Hermjakob�- Proteomics, 2006 - Wiley Online Library
Proteomics is a key field of modern biomolecular research, with many small and large scale
efforts producing a wealth of proteomics … reporting and collection of proteomics data. The …

Managing core resources for genomics and proteomics

R Apweiler, MJ Martin, C O'Donovan…�- Pharmacogenomics, 2003 - Taylor & Francis
… at the EBI and summarize … The EBI and other major bioinformatics centers provide a whole
range of analysis tools. There are currently more than 60 distinct services available at the EBI. …

The EMBL-EBI search and sequence analysis tools APIs in 2019

F Madeira, YM Park, J Lee, N Buso, T Gur…�- Nucleic acids�…, 2019 - academic.oup.com
… , proteomics and metabolomics based on 19 datasets. The search results of EMBL-EBI HMMER
(4) services, as … , are enriched with links using the EBI Search cross-referencing API. The …