User profiles for "author:Reddy T"

Tyler Reddy

- Verified email at lanl.gov - Cited by 53917

Timothy E Reddy

- Verified email at duke.edu - Cited by 36557

TBK Reddy

- Verified email at lbl.gov - Cited by 9395

[HTML][HTML] Array programming with NumPy

CR Harris, KJ Millman, SJ Van Der Walt, R Gommers…�- Nature, 2020 - nature.com
Array programming provides a powerful, compact and expressive syntax for accessing,
manipulating and operating on data in vectors, matrices and higher-dimensional arrays�…

[HTML][HTML] SciPy 1.0: fundamental algorithms for scientific computing in Python

P Virtanen, R Gommers, TE Oliphant, M Haberland…�- Nature�…, 2020 - nature.com
SciPy is an open-source scientific computing library for the Python programming language.
Since its initial release in 2001, SciPy has become a de facto standard for leveraging�…

[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

RM Bowers, NC Kyrpides, R Stepanauskas…�- Nature�…, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum�…

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

SG Landt, GK Marinov, A Kundaje…�- Genome�…, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-
seq) has become a valuable and widely used approach for mapping the genomic location of�…

[HTML][HTML] Architecture of the human regulatory network derived from ENCODE data

MB Gerstein, A Kundaje, M Hariharan, SG Landt…�- Nature, 2012 - nature.com
Transcription factors bind in a combinatorial fashion to specify the on-and-off states of
genes; the ensemble of these binding events forms a regulatory network, constituting the�…

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers

IB Hilton, AM D'ippolito, CM Vockley, PI Thakore…�- Nature�…, 2015 - nature.com
Technologies that enable targeted manipulation of epigenetic marks could be used to
precisely control cell phenotype or interrogate the relationship between the epigenome and�…

RNA-guided gene activation by CRISPR-Cas9–based transcription factors

P Perez-Pinera, DD Kocak, CM Vockley, AF Adler…�- Nature�…, 2013 - nature.com
Technologies for engineering synthetic transcription factors have enabled many advances in
medical and scientific research. In contrast to existing methods based on engineering of�…

Mortality, in-hospital morbidity, care practices, and 2-year outcomes for extremely preterm infants in the US, 2013-2018

EF Bell, SR Hintz, NI Hansen, CM Bann, MH Wyckoff…�- Jama, 2022 - jamanetwork.com
Importance Despite improvement during recent decades, extremely preterm infants continue
to contribute disproportionately to neonatal mortality and childhood morbidity. Objective To�…

[HTML][HTML] A genomic catalog of Earth's microbiomes

S Nayfach, S Roux, R Seshadri, D Udwary…�- Nature�…, 2021 - nature.com
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated�…

[HTML][HTML] COVID-19 and resilience of healthcare systems in ten countries

C Arsenault, A Gage, MK Kim, NR Kapoor…�- Nature medicine, 2022 - nature.com
Declines in health service use during the Coronavirus Disease 2019 (COVID-19) pandemic
could have important effects on population health. In this study, we used an interrupted time�…